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[175050_at]

Description CEK113F9R_rc /REP_DB=TREMBL Accession /GB=D73081 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk113f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 07      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 762
1 2 3 4 range
A 1097.4
(3)
P 		506.1
(-1.9)
P 		419.4
(-2.7)
P 		377.7
(-3)
P 		720
B 1139.9
(3)
P 		536.5
(-2)
P 		415.7
(-3)
P 		431.4
(-2.9)
P 		724
C 935.8
(3)
P 		588.6
(-1.2)
P 		452.5
(-2.8)
P 		439
(-3)
P 		497
avr 1057.7
(3) 		543.7
(-1.8) 		429.2
(-2.9) 		416
(-3) 		642

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 876
1 2 3 4 5 6 range
A 979.8
(3)
P 		625.2
(-0.2)
P 		321.4
(-3)
P 		598.8
(-0.5)
P 		384.6
(-2.4)
P 		323.1
(-3)
P 		658
B 1071.1
(3)
P 		480.9
(-1.2)
P 		218.8
(-3)
P 		405.2
(-1.7)
P 		340.5
(-2.1)
P 		288.1
(-2.5)
P 		852
C 1094.7
(3)
P 		466.1
(-1.5)
P 		471.1
(-1.4)
P 		253.4
(-3)
P 		406.9
(-1.9)
P 		287.6
(-2.8)
P 		841
avr 1048.5
(3) 		524.1
(-1.2) 		337.1
(-2.7) 		419.1
(-2) 		377.3
(-2.4) 		299.6
(-3) 		749
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 399.6
(3)
P 		109.9
(-2)
P 		109.6
(-2.1)
P 		55.3
(-3)
P 		344
B 363.5
(3)
P 		132.5
(-2.1)
P 		96.3
(-2.9)
P 		91.9
(-3)
P 		272
C 309.8
(3)
P 		169.2
(-0.6)
P 		157.7
(-0.9)
P 		74
(-3)
P 		236
avr 357.6
(3) 		137.2
(-1.7) 		121.2
(-2) 		73.7
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 180.6
(1.4)
P 		222.4
(3)
P 		70
(-3)
P 		151.9
(0.2)
P 		116.1
(-1.2)
P 		78.7
(-2.7)
P 		152
B 372.7
(3)
P 		160.1
(-1)
P 		53.1
(-3)
P 		107.3
(-2)
P 		138.4
(-1.4)
P 		107.4
(-2)
P 		320
C 405.8
(3)
P 		142.2
(-1.5)
P 		119.9
(-1.8)
P 		51
(-3)
P 		131.7
(-1.6)
P 		96.3
(-2.2)
P 		355
avr 319.7
(3) 		174.9
(-0.6) 		81
(-3) 		103.4
(-2.4) 		128.7
(-1.8) 		94.1
(-2.7) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21550
Sequence Type Exemplar sequence
Representative Public ID CEK113F9R NCBI
Target Description CEK113F9R_rc /REP_DB=TREMBL Accession /GB=D73081 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk113f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067743 NCBI Caenorhabditis elegans Erythroid-Like Transcription factor family member (elt-6) (elt-6) mRNA, complete cds. 11/11 A 
F52C12.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:1917853:1921616:1 gene:F52C12.5 11/11 None
F52C12.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:1917976:1921616:1 gene:F52C12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1921361-1921612(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol elt-6
Ensembl F52C12.5
Entrez Gene 176993 Entrez gene
SwissProt Q9TXV3 EMBL-EBI
WormBase CE31536 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68957 Erythroid-like transcription factor family protein 6 [Caenorhabditis elegans] ref|NP_500144.2| Erythroid-Like Transcription factor family member (elt-6) [Caenorhabditis elegans] gb|AAK32717.1| GATA-like transcription factor ELT-6 [Caenorhabditis elegans] 1.0E-178
blast CAE67949 Hypothetical protein CBG13549 [Caenorhabditis briggsae] 3.0E-99
blast AAD36952 Egg laying defective protein 18 [Caenorhabditis elegans] ref|NP_500143.1| EGg Laying defective family member (egl-18) [Caenorhabditis elegans] gb|AAK32716.1| GATA-like transcription factor ELT-5 [Caenorhabditis elegans] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 8.2E-20
Sequence
Target Sequence 
>C. ELEGANS:175050_AT
tatctcgtgtgatatatcccccaatgtcccctcccgatcaactgtgagctttatcagtat
ttccgttttcacttttccaacaaaaaatcccactgacccctgcggtggtctctgaaaaaa
caaagaatctcaacatttttttttttgcaatttaaatttttattgtattcccccttatta
gaagtgcaggtctctttcactttgtcgcaatatctgaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTCGTGTGATATATCCCCCAAT 291 659 13 Antisense
TCTCGTGTGATATATCCCCCAATGT 517 611 15 Antisense
CTCCCGATCAACTGTGAGCTTTATC 70 235 43 Antisense
GAGCTTTATCAGTATTTCCGTTTTC 73 389 58 Antisense
TATCAGTATTTCCGTTTTCACTTTT 458 659 64 Antisense
CCCTGCGGTGGTCTCTGAAAAAACA 69 257 110 Antisense
TTATTGTATTCCCCCTTATTAGAAG 308 679 172 Antisense
GTATTCCCCCTTATTAGAAGTGCAG 295 447 177 Antisense
GAAGTGCAGGTCTCTTTCACTTTGT 28 335 193 Antisense
GTCTCTTTCACTTTGTCGCAATATC 186 471 202 Antisense
TCACTTTGTCGCAATATCTGAACAG 603 625 209 Antisense
Sequence Source Affymetrix Proprietary Database