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[175048_at]

Description CEK062GYR_rc /REP_DB=TREMBL Accession /GB=D71147 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk62g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_highest_nonorm > 60      6grp_total > 29      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 329.3
(-3)
P 		518.2
(3)
P 		448.4
(0.8)
P 		398.8
(-0.8)
P 		189
B 359.5
(-1.3)
P 		433
(2)
P 		320.4
(-3)
P 		456.1
(3)
P 		136
C 396.5
(-1.9)
P 		462
(0.1)
P 		359.8
(-3)
P 		558.2
(3)
P 		198
avr 361.8
(-3) 		471.1
(3) 		376.2
(-2.2) 		471
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 494.5
(3)
P 		369
(-0.2)
P 		255.9
(-3)
P 		291.5
(-2.1)
P 		409.4
(0.9)
P 		360.9
(-0.4)
P 		239
B 488.8
(3)
P 		485.8
(2.9)
P 		368.4
(-2.8)
P 		421.9
(-0.2)
P 		392.8
(-1.6)
P 		364.6
(-3)
P 		124
C 461.2
(3)
P 		402.6
(0.7)
P 		310.9
(-3)
P 		344.3
(-1.7)
P 		380.8
(-0.2)
P 		321.6
(-2.6)
P 		150
avr 481.5
(3) 		419.1
(0.8) 		311.7
(-3) 		352.6
(-1.6) 		394.3
(-0.1) 		349
(-1.7) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 119.9
(3)
P 		112.5
(2.3)
P 		117.2
(2.7)
P 		58.4
(-3)
P 		62
B 114.6
(3)
P 		106.9
(1.9)
P 		74.2
(-3)
P 		97.2
(0.4)
P 		40
C 131.2
(2.8)
P 		132.8
(3)
P 		125.4
(1.9)
P 		94.1
(-3)
P 		39
avr 121.9
(3) 		117.4
(2.3) 		105.6
(0.5) 		83.2
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 91.2
(-0.2)
P 		131.2
(3)
P 		55.7
(-3)
P 		73.9
(-1.6)
P 		123.5
(2.4)
P 		87.9
(-0.4)
P 		76
B 170.1
(3)
P 		161.7
(2.4)
P 		89.5
(-3)
P 		111.7
(-1.3)
P 		159.6
(2.2)
P 		136
(0.5)
P 		81
C 170.9
(3)
P 		122.9
(0.2)
P 		79.1
(-2.4)
P 		69.2
(-3)
P 		123.2
(0.2)
P 		107.7
(-0.7)
P 		102
avr 144.1
(3) 		138.6
(2.5) 		74.8
(-3) 		84.9
(-2.1) 		135.4
(2.2) 		110.5
(0.1) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22113
Sequence Type Exemplar sequence
Representative Public ID CEK062GYR NCBI
Target Description CEK062GYR_rc /REP_DB=TREMBL Accession /GB=D71147 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk62g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C34F6.7 ENSEMBL cdna:known chromosome:CEL140:X:11210056:11215398:-1 gene:C34F6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11210061-11210369(-) 100.0 100.0
Public Domain and Genome References
Ensembl C34F6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03938 Hypothetical protein C34F6.7 [Caenorhabditis elegans] ref|NP_509874.1| C34F6.7 [Caenorhabditis elegans] 0.0
blast CAE70681 Hypothetical protein CBG17398 [Caenorhabditis briggsae] 1.0E-160
blast AAL13910 LD39811p [Drosophila melanogaster] 4.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
C34F6.7 4 7-29,55-73,86-105,125-147
Sequence
Target Sequence 
>C. ELEGANS:175048_AT
tctttcccatgtaccttatttcataaaggtcatgcagctcgttcaattcaatgttgcggt
gttgggtaaacgagttagtaatcattgagtgtgtcccccaatacttgtcacaaagcgttt
tgtcccactgaccgactaagagcaaatttgagtaataattcttttgttgtacaccatagc
gctacatcatattcaccctcgcgacttagcgcacttctgccacatttttttgtcccagcc
cagttttttcctttgatacggtgttccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTCCCATGTACCTTATTTCATA 488 615 21 Antisense
CATGCAGCTCGTTCAATTCAATGTT 346 211 51 Antisense
ATGTTGCGGTGTTGGGTAAACGAGT 564 45 71 Antisense
ATCATTGAGTGTGTCCCCCAATACT 623 29 101 Antisense
TCCCCCAATACTTGTCACAAAGCGT 392 597 114 Antisense
GTCACAAAGCGTTTTGTCCCACTGA 598 463 127 Antisense
TTGTCCCACTGACCGACTAAGAGCA 653 705 140 Antisense
ATTCTTTTGTTGTACACCATAGCGC 464 11 178 Antisense
ACCATAGCGCTACATCATATTCACC 176 87 193 Antisense
TTCTGCCACATTTTTTTGTCCCAGC 655 691 235 Antisense
TTTTCCTTTGATACGGTGTTCCATC 386 675 266 Antisense
Sequence Source Affymetrix Proprietary Database