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[175047_at]

Description CEK014GZR_rc /REP_DB=TREMBL Accession /GB=D27589 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14g12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 83      6grp_total > 49      4grp_total > 32      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 337.6
(-2.1)
P 		305.1
(-3)
P 		525.4
(3)
P 		512.1
(2.6)
P 		220
B 247.4
(-3)
P 		504.2
(0.3)
P 		595.3
(1.5)
P 		716
(3)
P 		469
C 294.1
(-3)
P 		474.2
(0.2)
P 		634
(3)
P 		529.7
(1.2)
P 		340
avr 293
(-3) 		427.8
(-0.2) 		584.9
(3) 		585.9
(3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 399.1
(1.1)
P 		450.3
(3)
P 		399.4
(1.1)
P 		287.6
(-3)
P 		429.3
(2.2)
P 		422.8
(2)
P 		163
B 483.3
(1.3)
P 		478.9
(1.1)
P 		349
(-3)
P 		383.1
(-1.9)
P 		362.8
(-2.6)
P 		537
(3)
P 		188
C 508.5
(1.7)
P 		385.7
(-0.8)
P 		347.6
(-1.6)
P 		282.4
(-3)
P 		475.7
(1.1)
P 		568.1
(3)
P 		286
avr 463.6
(1.6) 		438.3
(0.8) 		365.3
(-1.5) 		317.7
(-3) 		422.6
(0.3) 		509.3
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 122.9
(1.8)
P 		66.2
(-3)
P 		137.3
(3)
P 		75
(-2.3)
P 		71
B 78.9
(-3)
P 		124.5
(0.7)
P 		138
(1.8)
P 		152.6
(3)
P 		74
C 97.4
(-2.6)
P 		136.3
(-0.9)
P 		221
(3)
P 		89.3
(-3)
P 		132
avr 99.7
(-3) 		109
(-2.2) 		165.4
(3) 		105.6
(-2.5) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 73.6
(-3)
P 		160.1
(3)
P 		87
(-2)
P 		72.9
(-3)
P 		129.6
(0.9)
P 		102.9
(-0.9)
P 		87
B 168.2
(1.3)
P 		159.4
(0.9)
P 		84.8
(-3)
P 		101.5
(-2.1)
P 		147.4
(0.3)
P 		200.2
(3)
P 		115
C 188.5
(2.9)
P 		117.7
(-0.3)
P 		88.5
(-1.6)
P 		56.8
(-3)
P 		153.9
(1.4)
P 		190.2
(3)
P 		133
avr 143.4
(1.6) 		145.7
(1.7) 		86.8
(-2.3) 		77.1
(-3) 		143.6
(1.6) 		164.4
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21720
Sequence Type Exemplar sequence
Representative Public ID CEK014GZR NCBI
Target Description CEK014GZR_rc /REP_DB=TREMBL Accession /GB=D27589 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072906 NCBI Caenorhabditis elegans UNCoordinated family member (unc-23) (unc-23) mRNA, complete cds. 11/11 None
H14N18.1a ENSEMBL cdna:known chromosome:CEL140:V:8938984:8942255:1 gene:H14N18.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179272 3 1 NM_072906 175047_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8941900-8942241(+) 84.75 100.0
Public Domain and Genome References
Ensembl H14N18.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17781 Uncoordinated protein 23, isoform a [Caenorhabditis elegans] ref|NP_505307.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-169
blast AAV58864 Uncoordinated protein 23, isoform c [Caenorhabditis elegans] ref|NP_001024011.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-167
blast AAO21425 Uncoordinated protein 23, isoform b [Caenorhabditis elegans] ref|NP_872142.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR003103 EMBL-EBI Apoptosis regulator Bcl-2 protein, BAG 4.1E-21
Sequence
Target Sequence 
>C. ELEGANS:175047_AT
gtaagtattgcctaattttgacatgaatctcttttgtctccagccctttttttagagtgt
cttttgtgaatttctgttgaaatctttgtagatttttttgctgattgatgtctatttaaa
tgtttctgtgatttttcatgagttttcagagccatagaattttcattcataattcttcca
ttctttttcactcgttttgtcattcattcattcctcctacggttgtcccttttctggaac
ttgtccctcttcgtttctcaaattcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAGTATTGCCTAATTTTGACATG 573 461 19 Antisense
TTGTCTCCAGCCCTTTTTTTAGAGT 507 703 52 Antisense
TCCAGCCCTTTTTTTAGAGTGTCTT 356 587 57 Antisense
GAGTGTCTTTTGTGAATTTCTGTTG 664 401 73 Antisense
GTAGATTTTTTTGCTGATTGATGTC 369 457 106 Antisense
GATGTCTATTTAAATGTTTCTGTGA 83 409 125 Antisense
GATTTTTCATGAGTTTTCAGAGCCA 283 429 148 Antisense
TTTCAGAGCCATAGAATTTTCATTC 277 673 162 Antisense
ATAATTCTTCCATTCTTTTTCACTC 583 25 187 Antisense
TTTCACTCGTTTTGTCATTCATTCA 325 673 204 Antisense
TCCCTCTTCGTTTCTCAAATTCAAA 171 597 262 Antisense
Sequence Source Affymetrix Proprietary Database