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[175046_s_at]

Description CEK124H9R_rc /REP_DB=TREMBL Accession /GB=D66873 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 60      6grp_total > 27      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 376
1 2 3 4 range
A 579.5
(1.6)
P 		486.6
(-0.1)
P 		321.2
(-3)
P 		659.1
(3)
P 		338
B 551
(0.5)
P 		364.3
(-2.7)
P 		349.5
(-3)
P 		697.4
(3)
P 		348
C 492.1
(1)
P 		430.2
(-1.2)
P 		381.6
(-3)
P 		547.6
(3)
P 		166
avr 540.9
(1) 		427
(-1.4) 		350.8
(-3) 		634.7
(3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 455.2
(1.7)
P 		348.8
(-0.8)
P 		323.6
(-1.4)
P 		257.5
(-3)
P 		426.8
(1)
P 		508.8
(3)
P 		251
B 604.9
(3)
P 		406.4
(-1.3)
P 		394.2
(-1.5)
P 		396.1
(-1.5)
P 		326.6
(-3)
P 		497.7
(0.7)
P 		278
C 748.9
(3)
P 		480.7
(-0.5)
P 		290.7
(-3)
P 		359.6
(-2.1)
P 		319.9
(-2.6)
P 		379.7
(-1.8)
P 		458
avr 603
(3) 		412
(-1.3) 		336.2
(-3) 		337.7
(-3) 		357.8
(-2.5) 		462.1
(-0.2) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 211
(3)
P 		105.6
(-2)
P 		84
(-3)
P 		96.5
(-2.4)
P 		127
B 175.7
(3)
P 		90
(-2.4)
P 		81
(-3)
P 		148.6
(1.3)
P 		95
C 162.9
(3)
P 		123.7
(-0.3)
P 		133
(0.5)
P 		92.3
(-3)
P 		71
avr 183.2
(3) 		106.4
(-2.5) 		99.3
(-3) 		112.5
(-2.1) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 83.9
(-1.2)
P 		124
(2.5)
P 		70.5
(-2.5)
P 		65.3
(-3)
P 		128.8
(3)
P 		123.9
(2.5)
P 		64
B 210.5
(3)
P 		135.3
(-0.9)
P 		95.7
(-3)
P 		104.9
(-2.5)
P 		132.7
(-1.1)
P 		185.6
(1.7)
P 		115
C 277.6
(3)
P 		146.7
(-0.8)
P 		74
(-3)
P 		72.3
(-3)
P 		103.5
(-2.1)
P 		127.1
(-1.4)
P 		205
avr 190.7
(3) 		135.3
(-0) 		80.1
(-3) 		80.8
(-3) 		121.7
(-0.7) 		145.5
(0.5) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175046_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20075
Sequence Type Exemplar sequence
Representative Public ID CEK124H9R NCBI
Target Description CEK124H9R_rc /REP_DB=TREMBL Accession /GB=D66873 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK124H9R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK124H9R CEK124H9R_rc /REP_DB=TREMBL Accession /GB=D66873 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124h9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3159088-3159507(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175046_S_AT
gaatcaatgcagttttatctcgtagttttgtagtttttcttatggccgctggatggcatc
cgatgcactaccgcgtcggggactcagcacggtttttctctattatcggttgtttgtaag
ctttgttgaaacccgtttacatagtgctgcccgttgttgattcgtgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAATGCAGTTTTATCTCGTAG 575 327 169 Antisense
TATCTCGTAGTTTTGTAGTTTTTCT 162 655 184 Antisense
AGTTTTTCTTATGGCCGCTGGATGG 392 63 200 Antisense
CTTATGGCCGCTGGATGGCATCCGA 156 223 207 Antisense
TGGATGGCATCCGATGCACTACCGC 166 551 218 Antisense
ACTCAGCACGGTTTTTCTCTATTAT 223 101 250 Antisense
GTTTTTCTCTATTATCGGTTGTTTG 148 449 260 Antisense
TCGGTTGTTTGTAAGCTTTGTTGAA 169 607 274 Antisense
TGAAACCCGTTTACATAGTGCTGCC 244 573 295 Antisense
TACATAGTGCTGCCCGTTGTTGATT 189 645 306 Antisense
GCTGCCCGTTGTTGATTCGTGATAT 467 297 314 Antisense
Sequence Source Affymetrix Proprietary Database