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[175045_at]

Description CEK124H9R_rc /REP_DB=TREMBL Accession /GB=D66873 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 80      6grp_total > 38      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 272.4
(0.7)
P 		239.5
(-1.3)
P 		209.7
(-3)
P 		312.3
(3)
P 		103
B 313.3
(3)
P 		168.3
(-3)
P 		179.7
(-2.5)
P 		242
(0)
P 		145
C 265.4
(-0.1)
P 		203.7
(-2.8)
P 		198.1
(-3)
P 		339.4
(3)
P 		141
avr 283.7
(2.2) 		203.8
(-2.5) 		195.8
(-3) 		297.9
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 283.7
(3)
P 		117.9
(-3)
P 		173.8
(-1)
P 		127.7
(-2.6)
P 		250.9
(1.8)
P 		222.7
(0.8)
P 		166
B 292.4
(2.3)
P 		287.3
(2.1)
P 		189.9
(-2.1)
P 		226
(-0.6)
P 		170.1
(-3)
P 		307.8
(3)
P 		138
C 307.9
(3)
P 		254.6
(1.3)
P 		118.8
(-3)
P 		197.3
(-0.5)
P 		145.3
(-2.2)
P 		205.7
(-0.2)
P 		189
avr 294.7
(3) 		219.9
(-0.4) 		160.8
(-3) 		183.7
(-2) 		188.8
(-1.7) 		245.4
(0.8) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 99.2
(3)
P 		52
(-2.3)
P 		54.8
(-2)
P 		45.7
(-3)
P 		54
B 99.9
(3)
P 		41.6
(-3)
P 		41.6
(-3)
P 		51.6
(-2)
P 		58
C 87.9
(3)
P 		58.6
(-2.7)
P 		69
(-0.7)
P 		57.2
(-3)
P 		31
avr 95.7
(3) 		50.7
(-3) 		55.1
(-2.4) 		51.5
(-2.9) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 52.3
(-0.2)
P 		41.9
(-1.7)
P 		37.8
(-2.3)
P 		32.4
(-3)
P 		75.7
(3)
P 		54.2
(0)
P 		43
B 101.8
(1.9)
P 		95.6
(1.3)
P 		46.1
(-3)
P 		59.9
(-1.8)
P 		69.1
(-1)
P 		114.8
(3)
P 		69
C 114.1
(3)
P 		77.7
(0.4)
P 		30.2
(-3)
P 		39.7
(-2.3)
P 		47
(-1.8)
P 		68.8
(-0.2)
P 		84
avr 89.4
(3) 		71.7
(0.9) 		38
(-3) 		44
(-2.3) 		63.9
(0) 		79.3
(1.8) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20075
Sequence Type Exemplar sequence
Representative Public ID CEK124H9R NCBI
Target Description CEK124H9R_rc /REP_DB=TREMBL Accession /GB=D66873 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK124H9R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK124H9R CEK124H9R_rc /REP_DB=TREMBL Accession /GB=D66873 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124h9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3159088-3159507(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175045_AT
ggattctatgcgtgatctagggttttaacattgaattttattgtatcctcccatttcccc
caaaaatgttgttgttgcctggcaatttgtaccattgttttgtttctcttggtgttgttt
tcttgcatcaacaataccccgagagaatcaatgcagttttatctcgtagttttgtagttt
ttcttatggccgctggatggcatccgatgcactaccgcgtcggggactcagcacggtttt
tctctattatcggttgtttgtaagctttgttgaaacccgtttacatagtgctgcccgttg
ttgattcgtgatattgtgtgtatttttaattaatttttacttgttccccaatctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCTATGCGTGATCTAGGGTTT 120 509 25 Antisense
TGCGTGATCTAGGGTTTTAACATTG 378 579 33 Antisense
TTGAATTTTATTGTATCCTCCCATT 121 705 55 Antisense
AAAATGTTGTTGTTGCCTGGCAATT 378 133 87 Antisense
TTGCCTGGCAATTTGTACCATTGTT 498 697 99 Antisense
TTGTACCATTGTTTTGTTTCTCTTG 633 707 111 Antisense
TTGTTTCTCTTGGTGTTGTTTTCTT 576 707 124 Antisense
CTCTTGGTGTTGTTTTCTTGCATCA 638 229 130 Antisense
TTCTTGCATCAACAATACCCCGAGA 145 689 144 Antisense
CAATACCCCGAGAGAATCAATGCAG 18 179 156 Antisense
ATTTTTACTTGTTCCCCAATCTGAT 427 15 357 Antisense
Sequence Source Affymetrix Proprietary Database