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[175044_at]

Description CEK080BZR_rc /REP_DB=TREMBL Accession /GB=D71693 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 62      4grp_high_8_8 > 27      6grp_highest_nonorm > 10      6grp_total > 26      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 1210.6
(3)
P 		777.1
(-1.8)
P 		668.9
(-3)
P 		822.7
(-1.3)
P 		542
B 1058.5
(1.7)
P 		1112.4
(2.3)
P 		619.5
(-3)
P 		1176.1
(3)
P 		557
C 1062.9
(3)
P 		1030.8
(1.8)
P 		902.6
(-3)
P 		996.7
(0.5)
P 		160
avr 1110.7
(3) 		973.4
(0.8) 		730.3
(-3) 		998.5
(1.2) 		380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 776
1 2 3 4 5 6 range
A 1716.2
(3)
P 		1581.4
(1.8)
P 		1127.2
(-2.3)
P 		1051.9
(-3)
P 		1181.2
(-1.8)
P 		1401.7
(0.2)
P 		664
B 1800.4
(3)
P 		1567.3
(1.2)
P 		1057.1
(-2.7)
P 		1365.7
(-0.4)
P 		1024.6
(-3)
P 		1486.5
(0.6)
P 		776
C 1577.3
(3)
P 		1449.5
(1.4)
P 		1219.7
(-1.6)
P 		1452.1
(1.4)
P 		1108.3
(-3)
P 		1131.9
(-2.7)
P 		469
avr 1698
(3) 		1532.7
(1.3) 		1134.7
(-2.7) 		1289.9
(-1.1) 		1104.7
(-3) 		1340
(-0.6) 		593
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 440.8
(3)
P 		168.7
(-2.1)
P 		174.9
(-2)
P 		120.4
(-3)
P 		320
B 337.6
(3)
P 		274.7
(1.1)
P 		143.6
(-3)
P 		250.6
(0.3)
P 		194
C 351.8
(3)
P 		296.4
(1.2)
P 		314.6
(1.8)
P 		168.1
(-3)
P 		184
avr 376.7
(3) 		246.6
(-1) 		211
(-2) 		179.7
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 381
1 2 3 4 5 6 range
A 316.4
(-1.7)
P 		562.4
(3)
P 		245.5
(-3)
P 		266.8
(-2.6)
P 		356.4
(-0.9)
P 		341.3
(-1.2)
P 		317
B 626.5
(3)
P 		521.7
(1.3)
P 		256.7
(-3)
P 		361.7
(-1.3)
P 		416.3
(-0.4)
P 		554.3
(1.8)
P 		370
C 584.6
(3)
P 		442.3
(0.1)
P 		310.4
(-2.6)
P 		292
(-3)
P 		358.6
(-1.6)
P 		378.9
(-1.2)
P 		293
avr 509.2
(3) 		508.8
(3) 		270.9
(-3) 		306.8
(-2.1) 		377.1
(-0.3) 		424.8
(0.9) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20686
Sequence Type Exemplar sequence
Representative Public ID CEK080BZR NCBI
Target Description CEK080BZR_rc /REP_DB=TREMBL Accession /GB=D71693 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026935 NCBI Caenorhabditis elegans F22D3.2a (F22D3.2) mRNA, complete cds. 11/11 None
F22D3.2a ENSEMBL cdna:known chromosome:CEL140:II:6928699:6947815:1 gene:F22D3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174134 3 1 NM_001026935 174160_at (11), 175044_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6947078-6947437(+) 100.0 100.0
Public Domain and Genome References
Ensembl F22D3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31497 Hypothetical protein F22D3.2a [Caenorhabditis elegans] ref|NP_001022106.1| F22D3.2a [Caenorhabditis elegans] 0.0
blast AAT81196 Hypothetical protein F22D3.2b [Caenorhabditis elegans] ref|NP_001022107.1| F22D3.2b [Caenorhabditis elegans] 0.0
blast AAV58873 Hypothetical protein F22D3.2c [Caenorhabditis elegans] ref|NP_001022108.1| F22D3.2c [Caenorhabditis elegans] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:175044_AT
gttattctacattatctattctgcgttattatcacttcccgttctcttttaatcatattc
ataataacccacctcatgtgtttcttctcctcaatttccttgactcataatatgattttt
ttcttacattctaaacatctcgtttttctttttttttctattgaattcttcaaagtgtgt
agtcgttctagccgattcctctttctctcctgatccccaattaggttgagttgtctggta
ttttcatcatcttccaatctgtccaattatttgccgttttcattggcttgttttgttttt
ccggtagcatctccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTCTACATTATCTATTCTGCG 568 447 19 Antisense
TATTCTGCGTTATTATCACTTCCCG 466 663 35 Antisense
ATAACCCACCTCATGTGTTTCTTCT 523 25 82 Antisense
TCTCCTCAATTTCCTTGACTCATAA 580 609 104 Antisense
GTGTGTAGTCGTTCTAGCCGATTCC 577 487 193 Antisense
CTCTCCTGATCCCCAATTAGGTTGA 429 231 223 Antisense
GAGTTGTCTGGTATTTTCATCATCT 625 397 246 Antisense
TTTCATCATCTTCCAATCTGTCCAA 590 671 260 Antisense
ATCTGTCCAATTATTTGCCGTTTTC 164 35 275 Antisense
TCATTGGCTTGTTTTGTTTTTCCGG 260 619 298 Antisense
TGTTTTTCCGGTAGCATCTCCAAAA 581 561 312 Antisense
Sequence Source Affymetrix Proprietary Database