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[175041_s_at]

Description CEK079CXR_rc /REP_DB=TREMBL Accession /GB=D71631 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk79c10 : 3prime end, single read.
Cluster 6grp_total > 16      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 303.1
(3)
A 		258.8
(0.6)
A 		192.8
(-3)
A 		220.5
(-1.5)
A 		110
B 359.1
(3)
A 		301
(-0.3)
A 		253.3
(-3)
A 		318.9
(0.7)
A 		106
C 327
(3)
A 		228.5
(-3)
A 		249.7
(-1.7)
A 		273.8
(-0.2)
A 		99
avr 329.7
(3) 		262.8
(-1.1) 		231.9
(-3) 		271.1
(-0.6) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 257.6
(1)
A 		306
(3)
A 		163.8
(-3)
A 		165.5
(-2.9)
A 		197.8
(-1.6)
A 		185.9
(-2.1)
A 		142
B 346.2
(3)
M 		289.9
(1.3)
A 		236.4
(-0.4)
A 		152.5
(-3)
A 		185
(-2)
A 		192.1
(-1.8)
A 		194
C 353.5
(3)
M 		248.1
(-0.3)
A 		231.4
(-0.8)
A 		159.8
(-3)
A 		189.3
(-2.1)
A 		186
(-2.2)
A 		194
avr 319.1
(3) 		281.3
(1.6) 		210.5
(-1.1) 		159.3
(-3) 		190.7
(-1.8) 		188
(-1.9) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 110.4
(3)
A 		56.2
(-1.2)
A 		50.4
(-1.6)
A 		32.3
(-3)
A 		78
B 114.5
(3)
A 		74.4
(-1.3)
A 		58.7
(-3)
A 		68
(-2)
A 		56
C 108.2
(3)
A 		65.7
(-1.1)
A 		87
(0.9)
A 		46.2
(-3)
A 		62
avr 111
(3) 		65.4
(-1.4) 		65.4
(-1.4) 		48.8
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 47.5
(-2)
A 		108.8
(3)
A 		35.7
(-3)
A 		42
(-2.5)
A 		59.7
(-1)
A 		45.3
(-2.2)
A 		73
B 120.5
(3)
M 		96.5
(1.2)
A 		57.4
(-1.7)
A 		40.4
(-3)
A 		75.2
(-0.4)
A 		71.6
(-0.7)
A 		80
C 131
(3)
M 		75.7
(-0.4)
A 		58.9
(-1.4)
A 		32.1
(-3)
A 		61.2
(-1.2)
A 		62.3
(-1.2)
A 		99
avr 99.7
(3) 		93.7
(2.4) 		50.7
(-1.8) 		38.2
(-3) 		65.4
(-0.3) 		59.7
(-0.9) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175041_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20048
Sequence Type Exemplar sequence
Representative Public ID CEK079CXR NCBI
Target Description CEK079CXR_rc /REP_DB=TREMBL Accession /GB=D71631 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk79c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058397 NCBI Caenorhabditis elegans F54A5.2 (F54A5.2) mRNA, complete cds. 11/11 A 
SNAP00000014306 ENSEMBL cdna:SNAP chromosome:CEL140:I:963981:969334:-1 11/11 None
F54A5.2 ENSEMBL cdna:known chromosome:CEL140:I:963715:969427:-1 gene:F54A5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:969114-969448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54A5.2
Entrez Gene 171678 Entrez gene
SwissProt Q9TYT4 EMBL-EBI
WormBase CE20860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78221 Hypothetical protein F54A5.2 [Caenorhabditis elegans] ref|NP_490798.1| F54A5.2 [Caenorhabditis elegans] 0.0
blast AAC78221 Hypothetical protein F54A5.2 [Caenorhabditis elegans] ref|NP_490798.1| F54A5.2 [Caenorhabditis elegans] 1.0E-117
blast CAE61301 Hypothetical protein CBG05129 [Caenorhabditis briggsae] 1.0E-106
blast CAE61301 Hypothetical protein CBG05129 [Caenorhabditis briggsae] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.2E-4
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:175041_S_AT
gattctgcactggatcatttggtcggtggttgtggtgctgccaccgctgattcgatcggt
ggccattgtggacacttctattgcgtgtgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTGCACTGGATCATTTGGTCG 407 431 129 Antisense
ACTGGATCATTTGGTCGGTGGTTGT 373 97 137 Antisense
CATTTGGTCGGTGGTTGTGGTGCTG 427 211 144 Antisense
TCGGTGGTTGTGGTGCTGCCACCGC 290 605 151 Antisense
CTGCCACCGCTGATTCGATCGGTGG 39 237 166 Antisense
ACCGCTGATTCGATCGGTGGCCATT 12 89 171 Antisense
GATTCGATCGGTGGCCATTGTGGAC 51 433 177 Antisense
GATCGGTGGCCATTGTGGACACTTC 583 417 182 Antisense
GGTGGCCATTGTGGACACTTCTATT 134 499 186 Antisense
GCCATTGTGGACACTTCTATTGCGT 586 281 190 Antisense
GTGGACACTTCTATTGCGTGTGATA 392 491 196 Antisense
Sequence Source Affymetrix Proprietary Database