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[175040_at]

Description CEK079CXR_rc /REP_DB=TREMBL Accession /GB=D71631 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk79c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 51      6grp_total > 26      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 470
1 2 3 4 range
A 881.4
(3)
P 		423.5
(-3)
P 		468.4
(-2.4)
P 		421.9
(-3)
P 		460
B 848.3
(3)
P 		602.9
(-0.6)
P 		482.9
(-2.3)
P 		438.2
(-3)
P 		410
C 736.5
(3)
P 		535
(-0.7)
P 		475.4
(-1.8)
P 		411.6
(-3)
P 		325
avr 822.1
(3) 		520.5
(-1.5) 		475.6
(-2.2) 		423.9
(-3) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 795
(3)
P 		724
(1.9)
P 		418.9
(-3)
P 		491.2
(-1.8)
P 		537.1
(-1.1)
P 		616.8
(0.2)
P 		376
B 662
(2.7)
P 		674.1
(3)
P 		472
(-2.2)
P 		549
(-0.2)
P 		461.2
(-2.5)
P 		440.2
(-3)
P 		234
C 720
(3)
P 		648.3
(1.7)
P 		637.5
(1.5)
P 		399.6
(-3)
P 		464.5
(-1.8)
P 		573.2
(0.3)
P 		320
avr 725.7
(3) 		682.1
(1.9) 		509.5
(-2.3) 		479.9
(-3) 		487.6
(-2.8) 		543.4
(-1.4) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 320.9
(3)
P 		91.9
(-2.3)
P 		122.5
(-1.6)
P 		61.8
(-3)
P 		259
B 270.5
(3)
P 		148.9
(-1.1)
P 		111.9
(-2.4)
P 		93.4
(-3)
P 		177
C 243.8
(3)
P 		153.8
(-0.1)
P 		165.7
(0.3)
P 		69.4
(-3)
P 		174
avr 278.4
(3) 		131.5
(-1.3) 		133.4
(-1.3) 		74.9
(-3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 146.6
(-1)
P 		257.5
(3)
P 		91.2
(-3)
P 		124.6
(-1.8)
P 		162.1
(-0.4)
P 		150.2
(-0.9)
P 		166
B 230.4
(3)
P 		224.4
(2.7)
P 		114.6
(-3)
P 		145.4
(-1.4)
P 		187.4
(0.8)
P 		164.1
(-0.4)
P 		116
C 266.9
(3)
P 		197.8
(0.8)
P 		162.3
(-0.4)
P 		80.4
(-3)
P 		150.3
(-0.8)
P 		191.9
(0.6)
P 		187
avr 214.6
(2.3) 		226.6
(3) 		122.7
(-2.7) 		116.8
(-3) 		166.6
(-0.3) 		168.7
(-0.2) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175040_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20048
Sequence Type Exemplar sequence
Representative Public ID CEK079CXR NCBI
Target Description CEK079CXR_rc /REP_DB=TREMBL Accession /GB=D71631 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk79c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058397
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058397 NCBI Caenorhabditis elegans F54A5.2 (F54A5.2) mRNA, complete cds. A 
F54A5.2 ENSEMBL cdna:known chromosome:CEL140:I:963715:969427:-1 gene:F54A5.2 A 
SNAP00000014306 ENSEMBL cdna:SNAP chromosome:CEL140:I:963981:969334:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:969114-969448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54A5.2
Entrez Gene 171678 Entrez gene
SwissProt Q9TYT4 EMBL-EBI
WormBase CE20860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78221 Hypothetical protein F54A5.2 [Caenorhabditis elegans] ref|NP_490798.1| F54A5.2 [Caenorhabditis elegans] 0.0
blast AAC78221 Hypothetical protein F54A5.2 [Caenorhabditis elegans] ref|NP_490798.1| F54A5.2 [Caenorhabditis elegans] 1.0E-117
blast CAE61301 Hypothetical protein CBG05129 [Caenorhabditis briggsae] 1.0E-106
blast CAE61301 Hypothetical protein CBG05129 [Caenorhabditis briggsae] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.2E-4
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:175040_AT
aaccagcgcacacatctttttgtattcatttttccatatatatttgtattattactacta
ttaccctcactactgttatcgatttttccctccacaaatttatgattctgcactggatca
tttggtcggtggttgtggtgctgccaccgctgattcgatcggtggccattgtggacactt
ctattgcgtgtgataaggtagggatggcctagaaaagtcacctagtccaacactcccacc
ccgtatctatgtttctgccatcttgtgatatttgctccataccatataccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAGCGCACACATCTTTTTGTAT 28 149 26 Antisense
TTATTACTACTATTACCCTCACTAC 352 679 74 Antisense
ATTACCCTCACTACTGTTATCGATT 417 13 85 Antisense
CGATTTTTCCCTCCACAAATTTATG 605 247 105 Antisense
TCCACAAATTTATGATTCTGCACTG 62 589 116 Antisense
ATTGCGTGTGATAAGGTAGGGATGG 193 7 208 Antisense
AGGGATGGCCTAGAAAAGTCACCTA 502 57 225 Antisense
AGAAAAGTCACCTAGTCCAACACTC 445 73 236 Antisense
CGTATCTATGTTTCTGCCATCTTGT 277 247 267 Antisense
CTGCCATCTTGTGATATTTGCTCCA 74 237 280 Antisense
GATATTTGCTCCATACCATATACCC 42 427 292 Antisense
Sequence Source Affymetrix Proprietary Database