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[175038_at]

Description CEK071BYR_rc /REP_DB=TREMBL Accession /GB=D65930 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk71b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 69      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 309.6
(0.6)
P 		111.2
(-3)
P 		247.9
(-0.5)
P 		438.8
(3)
P 		328
B 276
(1.3)
P 		265.4
(0.4)
P 		224.2
(-3)
P 		297.3
(3)
P 		73
C 359.1
(1)
P 		257.8
(-3)
P 		300.5
(-1.3)
P 		407.9
(3)
P 		150
avr 314.9
(0.7) 		211.5
(-3) 		257.5
(-1.4) 		381.3
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 274.9
(-1.4)
P 		300.6
(-0.5)
P 		226
(-3)
P 		273
(-1.5)
P 		355.1
(1.2)
P 		408.6
(3)
P 		183
B 302.9
(-0.8)
P 		288.8
(-1.1)
P 		210.7
(-3)
P 		339.5
(0.1)
P 		327.5
(-0.2)
P 		459
(3)
P 		248
C 314.9
(-1.1)
P 		246.6
(-2.6)
P 		262.4
(-2.3)
P 		230.5
(-3)
P 		293.2
(-1.6)
P 		498
(3)
P 		268
avr 297.6
(-1.3) 		278.7
(-1.8) 		233
(-3) 		281
(-1.7) 		325.3
(-0.5) 		455.2
(3) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 112.7
(3)
P 		24.1
(-3)
P 		64.8
(-0.2)
P 		64.2
(-0.3)
P 		89
B 88
(3)
P 		65.6
(-0.7)
P 		51.9
(-3)
P 		63.4
(-1.1)
P 		36
C 118.9
(3)
P 		74.1
(-2.4)
P 		104.7
(1.3)
P 		68.8
(-3)
P 		50
avr 106.5
(3) 		54.6
(-3) 		73.8
(-0.8) 		65.5
(-1.7) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 50.7
(-2.8)
P 		106.9
(3)
P 		49.2
(-3)
P 		69.2
(-0.9)
P 		107.2
(3)
P 		99.5
(2.2)
P 		58
B 105.4
(-0.3)
P 		96.1
(-0.8)
P 		51.2
(-3)
P 		89.9
(-1.1)
P 		133
(1.1)
P 		171.1
(3)
P 		120
C 116.7
(0.5)
P 		75.2
(-1.6)
P 		66.8
(-2)
P 		46.4
(-3)
P 		94.9
(-0.6)
P 		166.7
(3)
P 		120
avr 90.9
(-0.7) 		92.7
(-0.5) 		55.7
(-3) 		68.5
(-2.1) 		111.7
(0.7) 		145.8
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21963
Sequence Type Exemplar sequence
Representative Public ID CEK071BYR NCBI
Target Description CEK071BYR_rc /REP_DB=TREMBL Accession /GB=D65930 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk71b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070894 NCBI Caenorhabditis elegans H25P19.1 (H25P19.1) mRNA, complete cds. 11/11 A 
H25P19.1 ENSEMBL cdna:known chromosome:CEL140:V:687545:689829:1 gene:H25P19.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005331 7/11 Cross Hyb Matching Probes None
GENEFINDER00000005337 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:689470-689819(+) 95.13 100.0
Public Domain and Genome References
Gene Title
Ensembl H25P19.1
Entrez Gene 186785 Entrez gene
SwissProt Q9UB02 EMBL-EBI
WormBase CE31026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14770 Hypothetical protein H25P19.1 [Caenorhabditis elegans] ref|NP_503295.2| H25P19.1 [Caenorhabditis elegans] 1.0E-165
blast NP_503765 T03D3.5 [Caenorhabditis elegans] gb|AAG24188.3| Hypothetical protein T03D3.5 [Caenorhabditis elegans] 3.0E-44
blast CAE62230 Hypothetical protein CBG06282 [Caenorhabditis briggsae] 5.0E-43
Sequence
Target Sequence 
>C. ELEGANS:175038_AT
gaccaccacgcatcaacttgaaattccgattcactccgtcaaaactcggaacagcgacgc
cgggcatttcgatcatttcctcgccgactccaccgaaatctccgccgaaatccaccccgc
gaacttcaaaatcgacgccaccgaagcgcccatacctaaagcgatctctcgagcaggccc
gcggcggagcccagaagtcctatccggcccgaacgcgacgctcgacgaacatctttgaat
aattccccatctcaactctcacttttttgccggttgtgtaatatttattctaacgtgatt
tttgttgtgtcactttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCACCACGCATCAACTTGAAATT 64 385 13 Antisense
TTGAAATTCCGATTCACTCCGTCAA 403 703 30 Antisense
TTCCGATTCACTCCGTCAAAACTCG 13 699 36 Antisense
CAAAACTCGGAACAGCGACGCCGGG 338 189 52 Antisense
CCGAAGCGCCCATACCTAAAGCGAT 54 263 153 Antisense
CCTAAAGCGATCTCTCGAGCAGGCC 45 267 167 Antisense
GCGACGCTCGACGAACATCTTTGAA 448 289 227 Antisense
TTGAATAATTCCCCATCTCAACTCT 445 703 247 Antisense
CTCTCACTTTTTTGCCGGTTGTGTA 125 223 268 Antisense
TTTGCCGGTTGTGTAATATTTATTC 63 667 278 Antisense
GTGATTTTTGTTGTGTCACTTTCTC 390 485 307 Antisense
Sequence Source Affymetrix Proprietary Database