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[175037_at]

Description CEK026CXR_rc /REP_DB=TREMBL Accession /GB=D33101 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk26c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 66      4grp_total > 63      6grp_highest_sub > In      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 281.9
(3)
P 		232.3
(-3)
P 		245.2
(-1.4)
P 		277.9
(2.5)
P 		50
B 360.5
(2.3)
P 		233.3
(-3)
P 		377.9
(3)
P 		270
(-1.5)
P 		145
C 381.4
(3)
P 		267.7
(-2.2)
P 		381.5
(3)
P 		249.3
(-3)
P 		132
avr 341.3
(3) 		244.4
(-3) 		334.9
(2.6) 		265.7
(-1.7) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 334.8
(-2.6)
P 		322.6
(-3)
P 		362.3
(-1.8)
P 		392
(-0.9)
P 		348.8
(-2.2)
P 		516.6
(3)
P 		194
B 352
(-1.4)
P 		317.6
(-2.5)
P 		420
(0.9)
P 		304
(-3)
P 		383.3
(-0.3)
P 		483.5
(3)
P 		180
C 350.8
(-2.7)
P 		358.1
(-2.4)
P 		418.4
(-0.5)
P 		340
(-3)
P 		366.7
(-2.2)
P 		529.6
(3)
P 		190
avr 345.9
(-2.6) 		332.8
(-3) 		400.2
(-0.7) 		345.3
(-2.6) 		366.3
(-1.9) 		509.9
(3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 102.6
(3)
P 		50.4
(-2.1)
P 		64.1
(-0.7)
P 		40.7
(-3)
P 		62
B 115
(3)
P 		57.6
(-3)
P 		87.6
(0.1)
P 		57.5
(-3)
P 		58
C 126.3
(2.6)
P 		77
(-0.7)
P 		133
(3)
P 		42
(-3)
P 		91
avr 114.6
(3) 		61.7
(-1.7) 		94.9
(1.3) 		46.7
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 61.7
(-3)
P 		114.7
(2)
P 		78.9
(-1.4)
P 		99.4
(0.5)
P 		105.2
(1.1)
P 		125.8
(3)
P 		64
B 122.5
(-0.5)
P 		105.7
(-1.5)
P 		102
(-1.7)
P 		80.5
(-3)
P 		155.7
(1.5)
P 		180.3
(3)
P 		100
C 130
(0.4)
P 		109.3
(-0.7)
P 		106.5
(-0.9)
P 		68.4
(-3)
P 		118.7
(-0.2)
P 		177.3
(3)
P 		109
avr 104.7
(-1.3) 		109.9
(-0.9) 		95.8
(-2) 		82.8
(-3) 		126.5
(0.3) 		161.1
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20797
Sequence Type Exemplar sequence
Representative Public ID CEK026CXR NCBI
Target Description CEK026CXR_rc /REP_DB=TREMBL Accession /GB=D33101 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk26c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062458 NCBI Caenorhabditis elegans F26G1.1 (F26G1.1) mRNA, complete cds. 11/11 A 
F26G1.1.1 ENSEMBL cdna:known chromosome:CEL140:II:4790303:4795638:1 gene:F26G1.1 11/11 A 
F26G1.1.2 ENSEMBL cdna:known chromosome:CEL140:II:4790303:4795617:1 gene:F26G1.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016463 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4795176-4795606(+) 99.22 99.22
Public Domain and Genome References
Gene Title
Ensembl F26G1.1
Entrez Gene 173826 Entrez gene
SwissProt Q19833 EMBL-EBI
WormBase CE37362 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246630_AT expressed protein at
CANINE:1600730_AT similar to CG8202-PA cfa
CANINE:1587193_AT similar to CG8202-PA cfa
CANINE_2:CFA.18243.1.S1_S_AT similar to CG8202-PA cfa
CANINE_2:CFA.8830.1.A1_A_AT similar to CG8202-PA cfa
CANINE_2:CFAAFFX.27678.1.S1_AT similar to CG8202-PA cfa
CANINE_2:CFAAFFX.27678.1.S1_S_AT similar to CG8202-PA cfa
DROSOPHILA_2:1635932_AT dm
DROSOPHILA_2:1630360_A_AT dm
DROSOPHILA_2:1627021_AT dm
DROSGENOME1:141788_AT dm
CHICKEN:GGA.18423.1.S1_S_AT similar to esophageal cancer associated protein gga
CHICKEN:GGA.9206.1.S1_AT similar to esophageal cancer associated protein gga
CHICKEN:GGAAFFX.1402.1.S1_S_AT similar to esophageal cancer associated protein gga
CHICKEN:GGAAFFX.25398.1.S1_S_AT similar to esophageal cancer associated protein gga
HU35KSUBB:RC_AA009794_AT esophageal cancer associated protein hs
U133_X3P:HS2.375479.1.S1_3P_X_AT esophageal cancer associated protein hs
U133_X3P:HS2.375479.1.S1_3P_AT esophageal cancer associated protein hs
U133_X3P:HS.5320.0.S1_3P_A_AT esophageal cancer associated protein hs
U133_X3P:1558557_3P_AT esophageal cancer associated protein hs
HG-U133_PLUS_2:1558557_AT esophageal cancer associated protein hs
HG-U133A_2:203173_S_AT esophageal cancer associated protein hs
HG-U133_PLUS_2:203173_S_AT esophageal cancer associated protein hs
HG-U133A:203173_S_AT esophageal cancer associated protein hs
HG-U95AV2:41791_AT esophageal cancer associated protein hs
HG-U95E:79100_AT esophageal cancer associated protein hs
HG-U133_PLUS_2:240516_AT Esophageal cancer associated protein hs
HG-U133B:240516_AT Esophageal cancer associated protein hs
HG-U95B:43629_AT Esophageal cancer associated protein hs
HG-U95D:78691_AT Esophageal cancer associated protein hs
HG-U95E:82551_AT Esophageal cancer associated protein hs
HG-U95D:86051_AT Esophageal cancer associated protein hs
HG-U95D:87815_AT Esophageal cancer associated protein hs
HU35KSUBD:RC_AA521148_AT Esophageal cancer associated protein hs
HU35KSUBA:W27386_AT Esophageal cancer associated protein hs
U133_X3P:HS.143127.0.A1_3P_AT Esophageal cancer associated protein hs
MOE430B:1432304_A_AT RIKEN cDNA 9030624J02 gene mm
MOUSE430_2:1432304_A_AT RIKEN cDNA 9030624J02 gene mm
MOE430B:1431001_AT RIKEN cDNA 9030624J02 gene mm
MOUSE430_2:1431001_AT RIKEN cDNA 9030624J02 gene mm
MG-U74BV2:112396_AT RIKEN cDNA 9030624J02 gene mm
MOE430A:1426694_AT RIKEN cDNA 9030624J02 gene mm
MOUSE430A_2:1426694_AT RIKEN cDNA 9030624J02 gene mm
MOUSE430_2:1426694_AT RIKEN cDNA 9030624J02 gene mm
MOE430A:1426695_AT RIKEN cDNA 9030624J02 gene mm
MOUSE430A_2:1426695_AT RIKEN cDNA 9030624J02 gene mm
MOUSE430_2:1426695_AT RIKEN cDNA 9030624J02 gene mm
MOE430B:1458181_AT RIKEN cDNA 9030624J02 gene mm
MOUSE430_2:1458181_AT RIKEN cDNA 9030624J02 gene mm
MU19KSUBB:TC32363_AT RIKEN cDNA 9030624J02 gene (9030624J02Rik), mRNA mm
MU19KSUBC:TC39651_AT RIKEN cDNA 9030624J02 gene (9030624J02Rik), mRNA mm
RG-U34C:RC_AI235508_AT similar to RIKEN cDNA 9030624J02 rn
RAE230A:1367514_AT similar to RIKEN cDNA 9030624J02 rn
RAE230B:1367514_AT similar to RIKEN cDNA 9030624J02 rn
RAT230_2:1367514_AT similar to RIKEN cDNA 9030624J02 rn
RAE230A:1376206_AT Similar to RIKEN cDNA 9030624J02 rn
RAT230_2:1376206_AT Similar to RIKEN cDNA 9030624J02 rn
Protein Similarities
Method ID Description E-Value
blast AAK31505 Hypothetical protein F26G1.1 [Caenorhabditis elegans] ref|NP_494859.2| F26G1.1 [Caenorhabditis elegans] 0.0
blast T16184 hypothetical protein F26G1.1 - Caenorhabditis elegans 0.0
blast CAE73204 Hypothetical protein CBG20608 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494859.2 1 2-24
F26G1.1.1 1 2-24
F26G1.1.2 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:175037_AT
tcatgaagagatgcgctccacgatccgaggtcttctgaaacgatcagtaggctcgcctgc
tcatttgcaaaaacgccttgacgcaatcattcaggatctccggaatgaagccagtcacga
tgaaactgtccgagatattcttcagagattatcacttttataatttgtcagtgcctatta
acttattattgtctaacttattttgtctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGAAGAGATGCGCTCCACGATC 297 621 127 Antisense
TGAAACGATCAGTAGGCTCGCCTGC 269 573 162 Antisense
GCTCGCCTGCTCATTTGCAAAAACG 354 299 177 Antisense
GCAAAAACGCCTTGACGCAATCATT 285 319 193 Antisense
TGACGCAATCATTCAGGATCTCCGG 227 571 205 Antisense
GGATCTCCGGAATGAAGCCAGTCAC 511 511 220 Antisense
AGCCAGTCACGATGAAACTGTCCGA 552 81 235 Antisense
GAAACTGTCCGAGATATTCTTCAGA 539 357 248 Antisense
ACTTTTATAATTTGTCAGTGCCTAT 12 103 280 Antisense
GTGCCTATTAACTTATTATTGTCTA 491 477 297 Antisense
TTATTGTCTAACTTATTTTGTCTAA 565 677 312 Antisense
Sequence Source Affymetrix Proprietary Database