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[175036_at]

Description CEK126FXR_rc /REP_DB=TREMBL Accession /GB=D64861 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk126f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_high_8_8 > 59      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 281
1 2 3 4 range
A 388.7
(0.8)
P 		345.6
(-0.5)
P 		462.3
(3)
P 		264.5
(-3)
A 		198
B 332
(0.6)
P 		371.1
(2.6)
A 		378.3
(3)
P 		262.7
(-3)
P 		116
C 429.3
(3)
P 		398.8
(2.3)
P 		424.9
(2.9)
P 		181
(-3)
P 		248
avr 383.3
(1.8) 		371.8
(1.4) 		421.8
(3) 		236.1
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 335.7
(-1.5)
P 		436.4
(3)
P 		303.4
(-2.9)
P 		301.2
(-3)
P 		412.9
(2)
P 		426.8
(2.6)
P 		135
B 456
(1.1)
P 		412.4
(-0)
P 		372.2
(-1)
P 		296.3
(-3)
P 		405.2
(-0.2)
P 		529.6
(3)
P 		233
C 488.5
(1.3)
P 		419.7
(-0.3)
P 		344.9
(-2.1)
P 		306.9
(-3)
P 		405.5
(-0.7)
P 		560
(3)
P 		253
avr 426.7
(0.7) 		422.8
(0.6) 		340.2
(-1.9) 		301.5
(-3) 		407.9
(0.1) 		505.5
(3) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 141.5
(3)
P 		75
(-0.9)
P 		120.9
(1.8)
P 		38.7
(-3)
A 		103
B 105.9
(3)
P 		91.6
(1.3)
A 		87.7
(0.8)
P 		56
(-3)
P 		50
C 142.1
(2.7)
P 		114.7
(1.3)
P 		148.1
(3)
P 		30.5
(-3)
P 		118
avr 129.8
(3) 		93.8
(0.5) 		118.9
(2.3) 		41.7
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 61.9
(-3)
P 		155.2
(3)
P 		66.1
(-2.7)
P 		76.4
(-2.1)
P 		124.6
(1)
P 		103.9
(-0.3)
P 		93
B 158.7
(1)
P 		137.3
(-0)
P 		90.4
(-2.4)
P 		78.5
(-3)
P 		164.6
(1.3)
P 		197.5
(3)
P 		119
C 181.1
(2.7)
P 		128.1
(0.2)
P 		87.8
(-1.8)
P 		61.7
(-3)
P 		131.2
(0.3)
P 		187.5
(3)
P 		126
avr 133.9
(1.1) 		140.2
(1.5) 		81.4
(-2.4) 		72.2
(-3) 		140.1
(1.5) 		163
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21571
Sequence Type Exemplar sequence
Representative Public ID CEK126FXR NCBI
Target Description CEK126FXR_rc /REP_DB=TREMBL Accession /GB=D64861 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk126f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067815 NCBI Caenorhabditis elegans Y69A2AR.16 (Y69A2AR.16) mRNA, complete cds. 11/11 A 
Y69A2AR.16 ENSEMBL cdna:known chromosome:CEL140:IV:2504325:2530286:1 gene:Y69A2AR.16 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018842 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2528438-2530282(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.16
Entrez Gene 177039 Entrez gene
SwissProt Q95XI7 EMBL-EBI
WormBase CE27512 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258594_AT exportin-related at
CANINE:1589209_AT similar to Exportin-4 (Exp4) cfa
CANINE_2:CFA.12747.1.A1_S_AT similar to Exportin-4 (Exp4) cfa
CANINE_2:CFAAFFX.11709.1.S1_AT similar to Exportin-4 (Exp4) cfa
CHICKEN:GGA.13846.1.S1_S_AT exportin 4 gga
CHICKEN:GGAAFFX.10980.1.S1_S_AT exportin 4 gga
CHICKEN:GGAAFFX.11418.1.S1_AT exportin 4 gga
HG-FOCUS:218479_S_AT exportin 4 hs
HG-U133A:218479_S_AT exportin 4 hs
HG-U133_PLUS_2:218479_S_AT exportin 4 hs
HG-U133A_2:218479_S_AT exportin 4 hs
HU35KSUBB:RC_N49740_AT exportin 4 hs
HU35KSUBC:RC_AA418037_AT exportin 4 hs
U133_X3P:G11967998_3P_A_AT exportin 4 hs
U133_X3P:HS.117102.0.S2_3P_AT exportin 4 hs
HG-U133_PLUS_2:222649_AT exportin 4 hs
HG-U133B:222649_AT exportin 4 hs
HG-U95C:48741_AT exportin 4 hs
HG-U95C:61200_AT exportin 4 hs
HG-U95D:75909_AT exportin 4 hs
HG-U95D:85581_AT exportin 4 hs
HG-U133_PLUS_2:237243_AT Exportin 4 hs
HG-U133B:237243_AT Exportin 4 hs
HG-U95B:48319_AT Exportin 4 hs
HU35KSUBC:RC_AA279504_AT Exportin 4 hs
U133_X3P:HS.88629.0.A1_3P_AT Exportin 4 hs
MOUSE430A_2:1421054_AT exportin 4 mm
MOE430A:1421054_AT exportin 4 mm
MOUSE430_2:1421054_AT exportin 4 mm
MOE430A:1421055_AT exportin 4 mm
MOUSE430A_2:1421055_AT exportin 4 mm
MOUSE430_2:1421055_AT exportin 4 mm
MOE430B:1430797_AT exportin 4 mm
MOUSE430_2:1430797_AT exportin 4 mm
MOE430B:1442528_AT exportin 4 mm
MOUSE430_2:1442528_AT exportin 4 mm
MG-U74BV2:112721_AT Exportin 4 (Xpo4), mRNA mm
MOE430B:1440663_AT Exportin 4 (Xpo4), mRNA mm
MOUSE430_2:1440663_AT Exportin 4 (Xpo4), mRNA mm
MOE430B:1456396_AT Exportin 4 (Xpo4), mRNA mm
MOUSE430_2:1456396_AT Exportin 4 (Xpo4), mRNA mm
MU19KSUBC:TC38183_AT Exportin 4 (Xpo4), mRNA mm
MU19KSUBC:TC41187_AT Exportin 4 (Xpo4), mRNA mm
RG-U34C:RC_AI170652_AT exportin 4 (predicted) rn
RG-U34C:RC_AI072630_AT exportin 4 (predicted) rn
RG-U34C:RC_AI136233_S_AT exportin 4 (predicted) rn
RAE230B:1383296_A_AT exportin 4 (predicted) rn
RAT230_2:1383296_A_AT exportin 4 (predicted) rn
RAE230B:1385864_AT exportin 4 (predicted) rn
RAT230_2:1385864_AT exportin 4 (predicted) rn
RAE230B:1385428_AT exportin 4 (predicted) rn
RAT230_2:1385428_AT exportin 4 (predicted) rn
RAE230B:1396681_AT Exportin 4 (predicted) rn
RAT230_2:1396681_AT Exportin 4 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68560 Hypothetical protein Y69A2AR.16 [Caenorhabditis elegans] ref|NP_500216.1| Y69A2AR.16 [Caenorhabditis elegans] 0.0
blast CAE74685 Hypothetical protein CBG22497 [Caenorhabditis briggsae] 0.0
blast NP_071904 exportin 4 [Homo sapiens] 1.0E-59
Sequence
Target Sequence 
>C. ELEGANS:175036_AT
gtggaagagttcaattccgcagccgaatggaacaattcctaaacaagatccaaggacttt
tgagctataattaattttcccccttcagttttccgatttcccccataatttatcgatttt
ctcatattttacccaattttttttgcgctctctacatgttttcacacgatatttatttat
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAAGAGTTCAATTCCGCAGCCG 535 491 94 Antisense
GTTCAATTCCGCAGCCGAATGGAAC 158 445 102 Antisense
TCCGCAGCCGAATGGAACAATTCCT 563 589 109 Antisense
GAACAATTCCTAAACAAGATCCAAG 228 353 123 Antisense
AAGATCCAAGGACTTTTGAGCTATA 1 155 138 Antisense
TGAGCTATAATTAATTTTCCCCCTT 510 569 154 Antisense
TTCCGATTTCCCCCATAATTTATCG 251 697 184 Antisense
ATCGATTTTCTCATATTTTACCCAA 6 37 205 Antisense
GATTTTCTCATATTTTACCCAATTT 380 429 208 Antisense
GCTCTCTACATGTTTTCACACGATA 233 301 240 Antisense
GTTTTCACACGATATTTATTTATTT 665 447 251 Antisense
Sequence Source Affymetrix Proprietary Database