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[175035_at]

Description CEK115DXR_rc /REP_DB=TREMBL Accession /GB=D73188 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk115d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_high_8_8 > 46      6grp_highest_nonorm > 90      6grp_total > 09      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 56
(-3)
P 		149.7
(1.2)
P 		191.2
(3)
P 		83.7
(-1.8)
P 		135
B 65.5
(-3)
M 		205.1
(2.7)
P 		211.3
(3)
P 		93.7
(-1.8)
P 		146
C 47.9
(-3)
P 		263.2
(3)
P 		233.3
(2.2)
P 		120.6
(-1)
P 		215
avr 56.5
(-3) 		206
(2.8) 		211.9
(3) 		99.3
(-1.3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 168.7
(2.7)
P 		112.3
(-0.8)
P 		126.7
(0.1)
P 		173.4
(3)
P 		135.2
(0.6)
P 		76.8
(-3)
P 		97
B 154.5
(2.4)
P 		122.3
(0.2)
P 		113.4
(-0.4)
P 		164
(3)
P 		121
(0.1)
P 		74.1
(-3)
P 		90
C 156.8
(0.2)
P 		111.2
(-1.7)
P 		152.1
(0)
P 		223.5
(3)
P 		130.6
(-0.8)
P 		78.6
(-3)
P 		145
avr 160
(1.5) 		115.3
(-0.9) 		130.7
(-0.1) 		187
(3) 		128.9
(-0.2) 		76.5
(-3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 20.4
(-1.7)
P 		32.5
(0.2)
P 		50
(3)
P 		12.3
(-3)
P 		38
B 20.9
(-2.8)
M 		50.6
(3)
P 		49
(2.7)
P 		20
(-3)
P 		31
C 15.8
(-3)
P 		75.7
(2.5)
P 		81.3
(3)
P 		20.3
(-2.6)
P 		66
avr 19
(-2.8) 		52.9
(2) 		60.1
(3) 		17.5
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 31.1
(-0.1)
P 		39.9
(2)
P 		27.6
(-0.9)
P 		44
(3)
P 		40.8
(2.2)
P 		18.7
(-3)
P 		25
B 53.8
(3)
P 		40.7
(0)
P 		27.5
(-3)
P 		43.4
(0.6)
P 		49.2
(2)
P 		27.6
(-3)
P 		26
C 58.1
(3)
P 		33.9
(-1.6)
P 		38.7
(-0.7)
P 		44.9
(0.5)
P 		42.3
(0)
P 		26.3
(-3)
P 		32
avr 47.7
(3) 		38.2
(0.6) 		31.3
(-1.2) 		44.1
(2.1) 		44.1
(2.1) 		24.2
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21043
Sequence Type Exemplar sequence
Representative Public ID CEK115DXR NCBI
Target Description CEK115DXR_rc /REP_DB=TREMBL Accession /GB=D73188 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk115d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065193 NCBI Caenorhabditis elegans H19M22.3a (protease) mRNA, complete cds. 11/11 None
H19M22.3a ENSEMBL cdna:known chromosome:CEL140:III:2636394:2642837:1 gene:H19M22.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175383 3 1 NM_065193 175035_at (11), 188528_at (11)
NM_065195 188528_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2642514-2642818(+) 93.09 100.0
Public Domain and Genome References
Ensembl H19M22.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21412 Hypothetical protein H19M22.3a [Caenorhabditis elegans] ref|NP_497594.1| H19M22.3a [Caenorhabditis elegans] 0.0
blast T32825 hypothetical protein H19M22.3 - Caenorhabditis elegans 0.0
blast AAL06034 Hypothetical protein H19M22.3c [Caenorhabditis elegans] ref|NP_497596.2| H19M22.3c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001818 EMBL-EBI Peptidase M10A and M12B, matrixin and adamalysin 3.9E-16
Sequence
Target Sequence 
>C. ELEGANS:175035_AT
attgtttcaaaatcttccaaactcatatttattcatgtttttatgacaagaatgatatta
ctttcccccttatccgtctcctggtgtgtaccattgatctccgtgtgtgtgtgtgtgtgt
gtgctctgtgctctttttctgtatatgtggtgggatcccttttctttttgaaatttctgt
gcgtgcaataagttctagcttttcctcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTTTCAAAATCTTCCAAACTCA 379 1 77 Antisense
ATCTTCCAAACTCATATTTATTCAT 536 29 88 Antisense
CAAGAATGATATTACTTTCCCCCTT 237 185 123 Antisense
CGTCTCCTGGTGTGTACCATTGATC 257 245 151 Antisense
CTGGTGTGTACCATTGATCTCCGTG 605 239 157 Antisense
CATTGATCTCCGTGTGTGTGTGTGT 474 217 168 Antisense
TCTTTTTCTGTATATGTGGTGGGAT 423 613 208 Antisense
TATGTGGTGGGATCCCTTTTCTTTT 532 617 220 Antisense
TTCTTTTTGAAATTTCTGTGCGTGC 232 691 238 Antisense
CTGTGCGTGCAATAAGTTCTAGCTT 326 239 253 Antisense
CAATAAGTTCTAGCTTTTCCTCTTT 143 173 262 Antisense
Sequence Source Affymetrix Proprietary Database