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[175034_at]

Description CEK106BZR_rc /REP_DB=TREMBL Accession /GB=D72639 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk106b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 30      6grp_total > 38      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 1140.2
(3)
P 		689.4
(-3)
P 		816.8
(-1.3)
P 		949.2
(0.5)
P 		451
B 832.4
(1)
P 		790.2
(0.3)
P 		610
(-3)
P 		940.7
(3)
P 		331
C 1061.5
(3)
P 		766.5
(-3)
P 		797
(-2.4)
P 		1023.8
(2.2)
P 		295
avr 1011.4
(3) 		748.7
(-2.8) 		741.3
(-3) 		971.2
(2.1) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 747
1 2 3 4 5 6 range
A 1254
(3)
P 		922.2
(0.1)
P 		701.2
(-1.8)
P 		558.4
(-3)
P 		838
(-0.6)
P 		1059.8
(1.3)
P 		696
B 1211
(3)
P 		926.8
(0.2)
P 		610
(-3)
P 		747.8
(-1.6)
P 		767
(-1.4)
P 		1056.2
(1.5)
P 		601
C 1177.2
(3)
P 		964.4
(1.1)
P 		725.1
(-1)
P 		507
(-3)
P 		855.9
(0.1)
P 		837.2
(-0)
P 		670
avr 1214.1
(3) 		937.8
(0.3) 		678.8
(-2.3) 		604.4
(-3) 		820.3
(-0.9) 		984.4
(0.7) 		610
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 415.2
(3)
P 		149.7
(-2.8)
P 		213.5
(-1.4)
P 		138.9
(-3)
P 		276
B 265.4
(3)
P 		195.2
(-0.4)
P 		141.4
(-3)
P 		200.5
(-0.1)
P 		124
C 351.4
(3)
P 		220.4
(-1.4)
P 		277.8
(0.5)
P 		172.6
(-3)
P 		179
avr 344
(3) 		188.4
(-2.4) 		210.9
(-1.6) 		170.7
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 231.2
(-0.1)
P 		328
(3)
P 		152.7
(-2.6)
P 		141.6
(-3)
P 		252.9
(0.6)
P 		258
(0.7)
P 		186
B 421.4
(3)
P 		308.5
(0.5)
P 		148.1
(-3)
P 		198.1
(-1.9)
P 		311.6
(0.6)
P 		393.8
(2.4)
P 		273
C 436.4
(3)
P 		294.3
(0.5)
P 		184.5
(-1.5)
P 		101.9
(-3)
P 		277
(0.1)
P 		280.2
(0.2)
P 		335
avr 363
(3) 		310.3
(1.5) 		161.8
(-2.6) 		147.2
(-3) 		280.5
(0.7) 		310.7
(1.5) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20434
Sequence Type Exemplar sequence
Representative Public ID CEK106BZR NCBI
Target Description CEK106BZR_rc /REP_DB=TREMBL Accession /GB=D72639 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk106b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170794 NCBI Caenorhabditis elegans WW domain Protein (E3 ubiquitin ligase) family member (wwp-1) (wwp-1) mRNA, complete cds. 11/11 None
Y65B4BR.4a ENSEMBL cdna:known chromosome:CEL140:I:537125:542192:1 gene:Y65B4BR.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171647 2 1 NM_170794 175034_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:542020-542182(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y65B4BR.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73849 Ww domain protein (e3 ubiquitin ligase) protein 1, isoform a [Caenorhabditis elegans] ref|NP_740775.1| WW domain Protein (E3 ubiquitin ligase) family member (wwp-1) [Caenorhabditis elegans] 0.0
blast AAN73850 Ww domain protein (e3 ubiquitin ligase) protein 1, isoform b [Caenorhabditis elegans] ref|NP_740776.1| WW domain Protein (E3 ubiquitin ligase) family member (wwp-1) [Caenorhabditis elegans] 0.0
blast CAE61291 Hypothetical protein CBG05115 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 3.5E-15
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 6.0E-16
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 8.9E-13
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.5E-12
Pfam IPR000569 EMBL-EBI HECT domain (Ubiquitin-protein ligase) 1.0E-126
Pfam IPR000008 EMBL-EBI C2 domain 3.1E-7
Sequence
Target Sequence 
>C. ELEGANS:175034_AT
ttcttacttggtccttgtcattcttagttccagtttttttcacggaagcagctctcgatt
attaattcaaatgcatccccccaaccaatccgtcaccccccgattagaacaatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTACTTGGTCCTTGTCATTCTT 434 687 13 Antisense
ACTTGGTCCTTGTCATTCTTAGTTC 52 103 18 Antisense
TGGTCCTTGTCATTCTTAGTTCCAG 34 553 21 Antisense
TCCTTGTCATTCTTAGTTCCAGTTT 14 589 24 Antisense
TCATTCTTAGTTCCAGTTTTTTTCA 692 617 30 Antisense
GTTTTTTTCACGGAAGCAGCTCTCG 632 447 45 Antisense
TTTTCACGGAAGCAGCTCTCGATTA 587 673 49 Antisense
ACGGAAGCAGCTCTCGATTATTAAT 202 97 54 Antisense
AAGCAGCTCTCGATTATTAATTCAA 643 149 58 Antisense
TTATTAATTCAAATGCATCCCCCCA 279 675 71 Antisense
TCACCCCCCGATTAGAACAATTTCT 107 627 105 Antisense
Sequence Source Affymetrix Proprietary Database