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[175033_at]

Description CEK116FZR_rc /REP_DB=TREMBL Accession /GB=D73277 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116f12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 263.3
(-1.7)
P 		281.8
(-0.9)
P 		376.4
(3)
P 		232.1
(-3)
P 		144
B 296.1
(-3)
P 		402.5
(3)
P 		331.2
(-1)
P 		306.4
(-2.4)
P 		106
C 398
(1.3)
P 		423.5
(2)
P 		462.5
(3)
P 		233.8
(-3)
P 		229
avr 319.1
(-0.2) 		369.3
(2.1) 		390
(3) 		257.4
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 336.7
(2.2)
P 		230.3
(-3)
P 		268.3
(-1.2)
P 		255.7
(-1.8)
P 		337.5
(2.2)
P 		353.6
(3)
P 		123
B 402.1
(3)
P 		326.5
(-1.6)
P 		305.8
(-2.8)
P 		321.6
(-1.9)
P 		322.5
(-1.8)
P 		303.2
(-3)
P 		99
C 442.5
(3)
P 		266
(-1.5)
P 		209.1
(-3)
P 		244
(-2.1)
P 		322.1
(-0.1)
P 		392.8
(1.7)
P 		233
avr 393.8
(3) 		274.3
(-2.4) 		261.1
(-3) 		273.8
(-2.4) 		327.4
(-0) 		349.9
(1) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 95.9
(2.8)
P 		61.2
(-0.5)
P 		98.4
(3)
P 		34
(-3)
P 		64
B 94.4
(2.1)
P 		99.4
(3)
P 		76.7
(-1)
P 		65.3
(-3)
P 		34
C 131.8
(1.6)
P 		121.8
(1.1)
P 		161.2
(3)
P 		39.4
(-3)
P 		122
avr 107.4
(2.6) 		94.1
(1.4) 		112.1
(3) 		46.2
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 62.1
(-2.5)
P 		81.9
(0.2)
P 		58.4
(-3)
P 		64.8
(-2.1)
P 		101.8
(3)
P 		86.1
(0.8)
P 		43
B 139.9
(3)
P 		108.7
(0.1)
P 		74.3
(-3)
P 		85.2
(-2)
P 		131
(2.2)
P 		113.1
(0.5)
P 		66
C 164
(3)
P 		81.2
(-1.3)
P 		53.2
(-2.8)
P 		49.1
(-3)
P 		104.2
(-0.1)
P 		131.5
(1.3)
P 		115
avr 122
(3) 		90.6
(-0.1) 		62
(-3) 		66.4
(-2.6) 		112.3
(2) 		110.2
(1.8) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21126
Sequence Type Exemplar sequence
Representative Public ID CEK116FZR NCBI
Target Description CEK116FZR_rc /REP_DB=TREMBL Accession /GB=D73277 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116f12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y53G8AR.9 ENSEMBL cdna:known chromosome:CEL140:III:3317734:3321234:-1 gene:Y53G8AR.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3317743-3318063(-) 82.5 100.0
Public Domain and Genome References
Ensembl Y53G8AR.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59540 Hypothetical protein Y53G8AR.9 [Caenorhabditis elegans] ref|NP_497690.1| Y53G8AR.9 [Caenorhabditis elegans] 1.0E-127
blast CAE69484 Hypothetical protein CBG15687 [Caenorhabditis briggsae] 1.0E-101
blast AAK26378 putative zinc finger protein [Heterodera glycines] 1.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-6
Sequence
Target Sequence 
>C. ELEGANS:175033_AT
cagcactttttccattcctaaaaattttccatccatcaaaaaattccaacacatttcccc
atgattttctcgatttctctctattttttaattaaaattttcaattttttgtgtgtgata
ataacatgtctaaaagaattattgatttttttatccatttttgttgtaattttccctttt
ttctcttgttttcttaccaattcccatccaaatcagctccaacagtactttaatttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCACTTTTTCCATTCCTAAAAAT 665 199 33 Antisense
TCCATTCCTAAAAATTTTCCATCCA 309 591 43 Antisense
CCATCCATCAAAAAATTCCAACACA 8 273 61 Antisense
TTCCAACACATTTCCCCATGATTTT 656 697 76 Antisense
ATTTCCCCATGATTTTCTCGATTTC 539 17 85 Antisense
TTTCTCGATTTCTCTCTATTTTTTA 338 671 98 Antisense
TTGTGTGTGATAATAACATGTCTAA 528 705 141 Antisense
TCTCTTGTTTTCTTACCAATTCCCA 674 611 214 Antisense
CATCCAAATCAGCTCCAACAGTACT 522 211 237 Antisense
AAATCAGCTCCAACAGTACTTTAAT 585 117 242 Antisense
GCTCCAACAGTACTTTAATTTATTT 666 297 248 Antisense
Sequence Source Affymetrix Proprietary Database