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[175031_at]

Description CEK129EZR_rc /REP_DB=TREMBL Accession /GB=D65003 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk129e12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 501.8
(3)
P 		91.2
(-3)
P 		88.4
(-3)
P 		232.3
(-0.9)
P 		413
B 424.5
(3)
P 		132.7
(-2.3)
P 		96.8
(-3)
P 		191
(-1.3)
P 		328
C 456.3
(3)
P 		182.9
(-2.3)
P 		144.4
(-3)
P 		201.7
(-1.9)
P 		312
avr 460.9
(3) 		135.6
(-2.6) 		109.9
(-3) 		208.3
(-1.3) 		351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 334.6
(3)
P 		225.6
(0.4)
P 		155.1
(-1.2)
P 		91.5
(-2.7)
P 		118.1
(-2.1)
P 		79.1
(-3)
P 		256
B 397
(3)
P 		259.8
(0.5)
P 		173.9
(-1.1)
P 		125.7
(-1.9)
P 		68
(-3)
P 		128.4
(-1.9)
P 		329
C 328.4
(3)
P 		237.5
(0.5)
P 		124.1
(-2.5)
P 		136.5
(-2.2)
P 		106.9
(-3)
P 		178.6
(-1.1)
P 		222
avr 353.3
(3) 		241
(0.4) 		151
(-1.7) 		117.9
(-2.5) 		97.7
(-3) 		128.7
(-2.3) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 182.7
(3)
P 		19.8
(-3)
P 		23.1
(-2.9)
P 		34
(-2.5)
P 		163
B 135.4
(3)
P 		32.8
(-2.4)
P 		22.4
(-3)
P 		40.7
(-2)
P 		113
C 151
(3)
P 		52.6
(-2)
P 		50.3
(-2.2)
P 		34
(-3)
P 		117
avr 156.4
(3) 		35.1
(-2.8) 		31.9
(-3) 		36.2
(-2.8) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 61.7
(1.2)
P 		80.2
(3)
P 		33.8
(-1.6)
P 		23.2
(-2.6)
P 		35.6
(-1.4)
P 		19.3
(-3)
P 		61
B 138.1
(3)
P 		86.5
(0.2)
P 		42.2
(-2.2)
P 		33.3
(-2.7)
P 		27.6
(-3)
P 		47.9
(-1.9)
P 		111
C 121.7
(3)
P 		72.5
(-0.1)
P 		31.6
(-2.7)
P 		27.4
(-3)
P 		34.6
(-2.5)
P 		59.8
(-0.9)
P 		94
avr 107.2
(3) 		79.7
(0.9) 		35.9
(-2.4) 		28
(-3) 		32.6
(-2.7) 		42.3
(-1.9) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21679
Sequence Type Exemplar sequence
Representative Public ID CEK129EZR NCBI
Target Description CEK129EZR_rc /REP_DB=TREMBL Accession /GB=D65003 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk129e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073283 NCBI Caenorhabditis elegans F22E12.1 (F22E12.1) mRNA, complete cds. 11/11 None
F22E12.1 ENSEMBL cdna:known chromosome:CEL140:V:10456423:10459904:-1 gene:F22E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10456445-10456799(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22E12.1
Entrez Gene 179460 Entrez gene
SwissProt O45916 EMBL-EBI
WormBase CE31911 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94892 Hypothetical protein F22E12.1 [Caenorhabditis elegans] emb|CAA16311.2| Hypothetical protein F22E12.1 [Caenorhabditis elegans] ref|NP_505684.2| F22E12.1 [Caenorhabditis elegans] 0.0
blast CAE64812 Hypothetical protein CBG09606 [Caenorhabditis briggsae] 0.0
blast AAB99830 thrombospondin [Haemonchus contortus] 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-21
Sequence
Target Sequence 
>C. ELEGANS:175031_AT
tccatacgtagactttgtcaaataagaactaaaaactattaaatttaatttctaatcttc
ttgatacgtgtatatttacattttctaggtttgaaattctctgaattgaacattttggaa
aaaactgttatcgggaaagaaatcttgaaattttaaaaatcttacctctttactttgtcc
ttgaggatcttcatctctatcctttcccgctagtattcctagattttttttccaattttt
tttcaagttttgagaaagttaatcctaggagaccgttccagatacatggtgccagcggca
cgttaataattcattttcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATACGTAGACTTTGTCAAATAA 518 591 13 Antisense
AATTTCTAATCTTCTTGATACGTGT 621 173 59 Antisense
GTATATTTACATTTTCTAGGTTTGA 334 453 82 Antisense
CTTACCTCTTTACTTTGTCCTTGAG 552 219 173 Antisense
GTCCTTGAGGATCTTCATCTCTATC 122 477 189 Antisense
TCCTTTCCCGCTAGTATTCCTAGAT 57 591 212 Antisense
GTTAATCCTAGGAGACCGTTCCAGA 249 357 270 Antisense
GAGACCGTTCCAGATACATGGTGCC 273 393 281 Antisense
TCCAGATACATGGTGCCAGCGGCAC 240 591 289 Antisense
GCCAGCGGCACGTTAATAATTCATT 152 279 303 Antisense
GCACGTTAATAATTCATTTTCCCAA 400 313 310 Antisense
Sequence Source Affymetrix Proprietary Database