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[175030_at]

Description CEK131FXR_rc /REP_DB=TREMBL Accession /GB=D65126 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk131f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 59      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 83      6grp_total > 39      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 452.6
(-0)
P 		264.5
(-3)
P 		317.5
(-2.2)
P 		643.2
(3)
P 		379
B 463.5
(-1.4)
P 		365.8
(-2.5)
P 		325.3
(-3)
P 		852.7
(3)
P 		527
C 510.7
(-1.7)
P 		479.5
(-3)
P 		539.7
(-0.4)
P 		620.7
(3)
P 		141
avr 475.6
(-1.1) 		369.9
(-3) 		394.2
(-2.6) 		705.5
(3) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 532
1 2 3 4 5 6 range
A 481.2
(-0.8)
P 		451.4
(-1.3)
P 		401.7
(-2.2)
P 		359.1
(-3)
P 		685.7
(3)
P 		592.8
(1.3)
P 		327
B 695.5
(2.4)
P 		678.7
(2.2)
P 		319.5
(-3)
P 		547.5
(0.3)
P 		635.7
(1.5)
P 		736.9
(3)
P 		417
C 438.1
(0.7)
P 		579.8
(3)
P 		204.6
(-3)
P 		488.4
(1.5)
P 		494.1
(1.6)
P 		541.7
(2.4)
P 		375
avr 538.3
(1.4) 		570
(2) 		308.6
(-3) 		465
(-0) 		605.2
(2.6) 		623.8
(3) 		315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 164.8
(3)
P 		57.4
(-3)
P 		83
(-1.6)
P 		94.2
(-0.9)
P 		107
B 147.8
(1.1)
P 		90.3
(-2.2)
P 		75.4
(-3)
P 		181.7
(3)
P 		106
C 169.1
(1.6)
P 		137.9
(-0.6)
P 		188.1
(3)
P 		104.7
(-3)
P 		83
avr 160.6
(3) 		95.2
(-3) 		115.5
(-1.1) 		126.9
(-0.1) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 88.7
(-2.9)
P 		160.5
(0.7)
P 		87.5
(-3)
P 		91.1
(-2.8)
P 		206.9
(3)
P 		144.3
(-0.1)
P 		119
B 242
(2)
P 		225.9
(1.5)
P 		77.6
(-3)
P 		145
(-0.9)
P 		258.3
(2.5)
P 		274.8
(3)
P 		197
C 162.4
(2.1)
P 		176.9
(2.8)
P 		52.1
(-3)
P 		98.2
(-0.9)
P 		159.9
(2)
P 		181.3
(3)
P 		129
avr 164.4
(1.1) 		187.8
(2.1) 		72.4
(-3) 		111.4
(-1.3) 		208.4
(3) 		200.1
(2.6) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20478
Sequence Type Exemplar sequence
Representative Public ID CEK131FXR NCBI
Target Description CEK131FXR_rc /REP_DB=TREMBL Accession /GB=D65126 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk131f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK1307.6 ENSEMBL cdna:known chromosome:CEL140:II:9640078:9644377:-1 gene:ZK1307.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9640105-9640405(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1307.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87433 Hypothetical protein ZK1307.6 [Caenorhabditis elegans] ref|NP_496075.1| FiZzy Related family member (fzr-1) [Caenorhabditis elegans] 0.0
blast CAE56991 Hypothetical protein CBG24857 [Caenorhabditis briggsae] 0.0
blast XP_623291 PREDICTED: similar to GA15568-PA [Apis mellifera] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.04
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.1E-7
Sequence
Target Sequence 
>C. ELEGANS:175030_AT
atgtgctcctgtgaattcatcatcatgtaatttcaatcgaagttcggctttttcgctgaa
caccccaccccaaataagtctttcaaaaactttcaatcgaatcctacatgtttctttttt
cgcctaatatttaaaattattgctccagtctgcttattttttcccccactgctcccagtg
cttctacattttttgttccaaatccccaacccctccccaagtttttttttatttttacaa
atttcttccagctttttatttgtctgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCTCCTGTGAATTCATCATCA 667 49 15 Antisense
TTCATCATCATGTAATTTCAATCGA 503 687 30 Antisense
GAAGTTCGGCTTTTTCGCTGAACAC 161 331 53 Antisense
AAAAACTTTCAATCGAATCCTACAT 18 113 99 Antisense
AATCGAATCCTACATGTTTCTTTTT 656 167 109 Antisense
CATGTTTCTTTTTTCGCCTAATATT 414 207 121 Antisense
TAAAATTATTGCTCCAGTCTGCTTA 53 641 146 Antisense
TTGCTCCAGTCTGCTTATTTTTTCC 88 703 154 Antisense
CTCCCAGTGCTTCTACATTTTTTGT 125 235 186 Antisense
TACAAATTTCTTCCAGCTTTTTATT 262 643 250 Antisense
TCTTCCAGCTTTTTATTTGTCTGCG 105 619 258 Antisense
Sequence Source Affymetrix Proprietary Database