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[175029_s_at]

Description CEK104BXR_rc /REP_DB=TREMBL Accession /GB=D72512 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk104b10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 37      4grp_high_8_8 > 0      6grp_highest_nonorm > 91      6grp_total > 87      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 204.5
(3)
P 		134.4
(-3)
P 		146.5
(-2)
P 		175.8
(0.5)
P 		70
B 214.8
(3)
P 		87
(-3)
P 		163.9
(0.6)
P 		180
(1.4)
P 		128
C 148.9
(-0.9)
P 		94.9
(-3)
P 		159
(-0.6)
P 		252.6
(3)
P 		158
avr 189.4
(2.2) 		105.4
(-3) 		156.5
(0.1) 		202.8
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 166.9
(-1.8)
P 		141.2
(-3)
P 		185.6
(-1)
P 		216
(0.4)
P 		173.1
(-1.5)
P 		271.8
(3)
P 		131
B 184.4
(-1.5)
P 		206.2
(-0.7)
P 		142.6
(-3)
P 		159
(-2.4)
P 		247.5
(0.9)
P 		305.6
(3)
P 		163
C 184.5
(-3)
P 		213.1
(-1.7)
P 		192
(-2.7)
P 		198.6
(-2.3)
P 		256.3
(0.3)
P 		314.4
(3)
P 		130
avr 178.6
(-2.7) 		186.8
(-2.4) 		173.4
(-3) 		191.2
(-2.1) 		225.6
(-0.5) 		297.3
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 74.5
(3)
P 		29.2
(-2.6)
P 		38.3
(-1.5)
P 		25.7
(-3)
P 		49
B 68.5
(3)
P 		21.5
(-3)
P 		38
(-0.9)
P 		38.4
(-0.8)
P 		47
C 49.3
(1.7)
P 		27.3
(-3)
P 		55.4
(3)
P 		42.6
(0.3)
P 		28
avr 64.1
(3) 		26
(-3) 		43.9
(-0.2) 		35.6
(-1.5) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 30.8
(-3)
P 		50.2
(0.3)
P 		40.4
(-1.4)
P 		54.8
(1.1)
P 		52.2
(0.6)
P 		66.2
(3)
P 		35
B 64.2
(-0.8)
P 		68.6
(-0.4)
P 		34.6
(-3)
P 		42.1
(-2.4)
P 		100.5
(2)
P 		114
(3)
P 		79
C 68.4
(-0.4)
P 		65
(-0.7)
P 		48.9
(-2.2)
P 		39.9
(-3)
P 		83
(1)
P 		105.2
(3)
P 		65
avr 54.5
(-1.5) 		61.3
(-0.8) 		41.3
(-3) 		45.6
(-2.5) 		78.6
(1.2) 		95.1
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175029_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20959
Sequence Type Exemplar sequence
Representative Public ID CEK104BXR NCBI
Target Description CEK104BXR_rc /REP_DB=TREMBL Accession /GB=D72512 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk104b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066053(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066053 NCBI Caenorhabditis elegans F20H11.1 (F20H11.1) mRNA, complete cds. 11/11 A 
SNAP00000039387 ENSEMBL cdna:SNAP chromosome:CEL140:III:6588906:6592110:-1 10/11 None
GENEFINDER00000039395 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6589415:6592110:-1 11/11 None
F20H11.1 ENSEMBL cdna:known chromosome:CEL140:III:6589323:6592110:-1 gene:F20H11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6589335-6589714(-) 98.8 99.4
Public Domain and Genome References
Gene Title
Ensembl F20H11.1
Entrez Gene 175933 Entrez gene
SwissProt O01738 EMBL-EBI
WormBase CE29769 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18466.1.S1_S_AT similar to differentially expressed in FDCP 8 isoform 1 cfa
CANINE_2:CFAAFFX.30306.1.S1_AT similar to differentially expressed in FDCP 8 isoform 1 cfa
DROSOPHILA_2:1626175_AT dm
DROSGENOME1:152443_AT dm
HG-U133_PLUS_2:219646_AT hypothetical protein FLJ20186 hs
HG-U133A:219646_AT hypothetical protein FLJ20186 hs
HG-U133A_2:219646_AT hypothetical protein FLJ20186 hs
HU35KSUBB:RC_AA027094_AT hypothetical protein FLJ20186 hs
HU35KSUBC:RC_AA505092_AT hypothetical protein FLJ20186 hs
U133_X3P:G8923176_3P_AT hypothetical protein FLJ20186 hs
U133_X3P:HS.62771.0.S1_3P_AT hypothetical protein FLJ20186 hs
HG-U133_PLUS_2:225637_AT hypothetical protein FLJ20186 hs
HG-U133B:225637_AT hypothetical protein FLJ20186 hs
HG-U95B:46569_AT hypothetical protein FLJ20186 hs
HG-U95B:46594_AT hypothetical protein FLJ20186 hs
HU35KSUBD:RC_C21494_AT Hypothetical protein FLJ20186 hs
MG-U74AV2:160490_AT differentially expressed in FDCP 8 mm
MOE430A:1415853_AT differentially expressed in FDCP 8 mm
MOUSE430A_2:1415853_AT differentially expressed in FDCP 8 mm
MOUSE430_2:1415853_AT differentially expressed in FDCP 8 mm
MU19KSUBB:TC29086_AT Differentially expressed in FDCP 8 (Def8), mRNA mm
MU19KSUBC:TC37610_AT Differentially expressed in FDCP 8 (Def8), mRNA mm
MU19KSUBC:TC37610_G_AT Differentially expressed in FDCP 8 (Def8), mRNA mm
RG-U34C:RC_AI231487_AT differentially expressed in FDCP 8 (predicted) rn
RAE230B:1384327_AT differentially expressed in FDCP 8 (predicted) rn
RAT230_2:1384327_AT differentially expressed in FDCP 8 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53983 Hypothetical protein F20H11.1 [Caenorhabditis elegans] ref|NP_498454.2| F20H11.1 [Caenorhabditis elegans] 0.0
blast CAE69178 Hypothetical protein CBG15211 [Caenorhabditis briggsae] 0.0
blast CAE57018 Hypothetical protein CBG24893 [Caenorhabditis briggsae] 1.0E-154
Sequence
Target Sequence 
>C. ELEGANS:175029_S_AT
ggaatgtgagacttgtgctggaaatggattcttctgcgaactttgcgacgacatcaacgt
agatcagaaaaataaaatcctatatccatttactgaaaatacacggtcatgtgccacgtg
tcttgcagtctaccataagaaatgcttcgaaaggaaaagtttaaattgtccaagatgtga
acgacgtcgaaaacgaactgagatcccgaaaacattgagttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGTGAGACTTGTGCTGGAAAT 315 533 16 Antisense
AATGGATTCTTCTGCGAACTTTGCG 427 163 38 Antisense
CTTCTGCGAACTTTGCGACGACATC 16 221 46 Antisense
GAACTTTGCGACGACATCAACGTAG 78 351 53 Antisense
AATCCTATATCCATTTACTGAAAAT 516 161 91 Antisense
GAAAATACACGGTCATGTGCCACGT 606 353 110 Antisense
ACACGGTCATGTGCCACGTGTCTTG 120 111 116 Antisense
ACGTGTCTTGCAGTCTACCATAAGA 318 95 131 Antisense
TTGTCCAAGATGTGAACGACGTCGA 478 695 181 Antisense
GACGTCGAAAACGAACTGAGATCCC 23 379 198 Antisense
GAGATCCCGAAAACATTGAGTTCAA 21 397 215 Antisense
Sequence Source Affymetrix Proprietary Database