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[175028_at]

Description CEK132HXR_rc /REP_DB=TREMBL Accession /GB=D65208 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk132h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 61      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 67      6grp_total > 60      4grp_total > 46      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1464
1 2 3 4 range
A 1485.1
(1.8)
P 		1229.7
(-3)
P 		1260.8
(-2.4)
P 		1551.6
(3)
P 		322
B 2131.5
(3)
P 		1455.9
(-1.2)
P 		1168
(-3)
P 		1419.1
(-1.4)
P 		964
C 2199.2
(3)
P 		1453.6
(-0.1)
P 		1013.3
(-1.9)
P 		735.2
(-3)
P 		1464
avr 1938.6
(3) 		1379.7
(-1.2) 		1147.4
(-3) 		1235.3
(-2.3) 		791

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1327
1 2 3 4 5 6 range
A 2026.7
(0.7)
P 		2181.2
(2.2)
P 		2266.3
(3)
P 		1637.7
(-3)
P 		2185.5
(2.2)
P 		1905
(-0.4)
P 		629
B 1581.8
(-1.9)
P 		1930.6
(-0.4)
P 		1840.9
(-0.8)
P 		2674
(3)
P 		1347
(-3)
P 		1390.2
(-2.8)
P 		1327
C 1819.1
(0.4)
P 		1595.5
(-3)
P 		1627
(-2.5)
P 		1789.4
(-0.1)
P 		1817.8
(0.4)
P 		1993.6
(3)
P 		398
avr 1809.2
(-2) 		1902.4
(0.1) 		1911.4
(0.3) 		2033.7
(3) 		1783.4
(-2.5) 		1762.9
(-3) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 604
1 2 3 4 range
A 540.7
(3)
P 		266.9
(-2.2)
P 		329.6
(-1)
P 		227.1
(-3)
P 		314
B 679.7
(3)
P 		359.6
(-1.7)
P 		270.7
(-3)
P 		302.4
(-2.5)
P 		409
C 728
(3)
P 		417.9
(-0.1)
P 		353.2
(-0.7)
P 		124
(-3)
P 		604
avr 649.5
(3) 		348.1
(-1.2) 		317.8
(-1.6) 		217.8
(-3) 		432

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 373.6
(-3)
P 		775.7
(3)
P 		493.6
(-1.2)
P 		415.4
(-2.4)
P 		659.5
(1.3)
P 		463.8
(-1.7)
P 		402
B 550.4
(-0.6)
P 		642.6
(1.5)
P 		447
(-3)
P 		708.3
(3)
P 		547.3
(-0.7)
P 		518.4
(-1.4)
P 		261
C 674.3
(3)
P 		486.8
(-0.6)
P 		414.1
(-2)
P 		359.9
(-3)
P 		588.2
(1.4)
P 		667.4
(2.9)
P 		314
avr 532.8
(-0.3) 		635
(3) 		451.6
(-3) 		494.5
(-1.6) 		598.3
(1.8) 		549.9
(0.2) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20201
Sequence Type Exemplar sequence
Representative Public ID CEK132HXR NCBI
Target Description CEK132HXR_rc /REP_DB=TREMBL Accession /GB=D65208 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk132h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T01A4.1c ENSEMBL cdna:known chromosome:CEL140:I:4491702:4508932:1 gene:T01A4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4508623-4508903(+) 100.0 100.0
Public Domain and Genome References
Ensembl T01A4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO61423 Hypothetical protein T01A4.1c [Caenorhabditis elegans] ref|NP_001021600.1| T01A4.1c [Caenorhabditis elegans] 0.0
blast AAL77521 guanylyl cyclase [Caenorhabditis elegans] 0.0
blast AAO61422 Hypothetical protein T01A4.1a [Caenorhabditis elegans] ref|NP_491379.3| T01A4.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.9E-19
Pfam IPR000719 EMBL-EBI Protein kinase 2.6E-9
Pfam IPR001054 EMBL-EBI Guanylate cyclase 1.4E-97
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 5.4E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
T01A4.1c 1 514-536
Sequence
Target Sequence 
>C. ELEGANS:175028_AT
atttcaacattttctagatctgttttatctaattttccggttttttttgctctttttttg
ttgctaaaaacaccaaaaatctatccgttttctctcgttttttttcgtctcactgaaaaa
atttgatcgactcacccacttttttttgtcgcccattgtgttctgtttcccgtgagaaaa
tcatcggttgccattttctgttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCAACATTTTCTAGATCTGTTT 554 15 30 Antisense
GATCTGTTTTATCTAATTTTCCGGT 251 397 46 Antisense
GCTAAAAACACCAAAAATCTATCCG 435 299 92 Antisense
CAAAAATCTATCCGTTTTCTCTCGT 465 191 103 Antisense
AAAATTTGATCGACTCACCCACTTT 102 135 147 Antisense
CACTTTTTTTTGTCGCCCATTGTGT 210 195 166 Antisense
ATTGTGTTCTGTTTCCCGTGAGAAA 234 3 184 Antisense
GTGTTCTGTTTCCCGTGAGAAAATC 415 485 187 Antisense
GTTTCCCGTGAGAAAATCATCGGTT 304 449 194 Antisense
AATCATCGGTTGCCATTTTCTGTTT 229 171 208 Antisense
TCATCGGTTGCCATTTTCTGTTTTT 693 621 210 Antisense
Sequence Source Affymetrix Proprietary Database