[Home] | [Total List]

[175027_at]

Description CEK110AYR_rc /REP_DB=TREMBL Accession /GB=D72836 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk110a11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 34      6grp_total > 26      4grp_total > 30      6grp_high1_sub > 02      6grp_total_sub > Cup      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 277.1
(3)
P 		65.7
(-3)
A 		88.6
(-2.4)
A 		207.2
(1)
P 		211
B 286.6
(3)
P 		104.6
(-2.6)
P 		90.7
(-3)
A 		158.6
(-0.9)
P 		196
C 234.9
(3)
P 		166.9
(0.3)
A 		83.6
(-3)
A 		198.1
(1.5)
P 		151
avr 266.2
(3) 		112.4
(-2.2) 		87.6
(-3) 		188
(0.4) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 167
(3)
A 		158.1
(2.5)
P 		115.5
(-0.2)
P 		86.7
(-1.9)
A 		118
(-0)
P 		69.4
(-3)
A 		98
B 124.2
(0.8)
P 		148.4
(3)
P 		83.5
(-3)
P 		128.6
(1.2)
P 		105.6
(-1)
P 		101.9
(-1.3)
P 		65
C 131.5
(1.4)
A 		155.4
(3)
P 		67.7
(-3)
A 		77.8
(-2.3)
A 		68.3
(-3)
A 		112.2
(0)
P 		88
avr 140.9
(1.8) 		154
(3) 		88.9
(-3) 		97.7
(-2.2) 		97.3
(-2.2) 		94.5
(-2.5) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 100.9
(3)
P 		14.3
(-3)
A 		23.2
(-2.4)
A 		30.3
(-1.9)
P 		87
B 91.4
(3)
P 		25.8
(-2.6)
P 		21
(-3)
A 		33.8
(-1.9)
P 		70
C 77.8
(3)
P 		48
(-0.7)
A 		29.1
(-3)
A 		33.4
(-2.5)
P 		49
avr 90
(3) 		29.4
(-2.5) 		24.4
(-3) 		32.5
(-2.3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 30.8
(-0.9)
A 		56.2
(3)
P 		25.2
(-1.7)
P 		22
(-2.2)
A 		35.6
(-0.1)
P 		16.9
(-3)
A 		39
B 43.2
(1.7)
P 		49.4
(3)
P 		20.3
(-3)
P 		34.1
(-0.2)
P 		42.9
(1.7)
P 		38
(0.6)
P 		29
C 48.7
(3)
A 		47.4
(2.8)
P 		17.2
(-2.7)
A 		15.6
(-3)
A 		22.1
(-1.8)
A 		37.6
(1)
P 		33
avr 40.9
(1) 		51
(3) 		20.9
(-3) 		23.9
(-2.4) 		33.5
(-0.5) 		30.8
(-1) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22112
Sequence Type Exemplar sequence
Representative Public ID CEK110AYR NCBI
Target Description CEK110AYR_rc /REP_DB=TREMBL Accession /GB=D72836 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk110a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076544(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076544 NCBI Caenorhabditis elegans F14D12.1b (F14D12.1) mRNA, complete cds. 9/11 A 
F14D12.1b ENSEMBL cdna:known chromosome:CEL140:X:5604534:5609080:1 gene:F14D12.1 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180829 2 1 NM_076544 175027_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5608699-5609058(+) 92.9 100.0
Public Domain and Genome References
Ensembl F14D12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02488 Hypothetical protein F14D12.1b [Caenorhabditis elegans] ref|NP_508945.1| F14D12.1b [Caenorhabditis elegans] 0.0
blast AAL02487 Hypothetical protein F14D12.1a [Caenorhabditis elegans] ref|NP_508946.1| F14D12.1a [Caenorhabditis elegans] 0.0
blast T16078 hypothetical protein F14D12.1 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:175027_AT
ggattcacgacgaatgtccgagtcatttagggtcaaggaagtaattcctcagatgcgatg
gcccaggcacggaagggatattttcggaaaaataataagacgcggaggagcaaccgacat
ctggacgacacgtcgccgtagctccttttgagtgacgttaaaattcaaactaaaattaaa
attttaaaattagatcctgtgtcaatattaatttaggactcgaacctgtttagtgaaaaa
aaaaatcaaattttgagccttcccatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCACGACGAATGTCCGAGTCA 700 507 18 Antisense
ATGTCCGAGTCATTTAGGGTCAAGG 700 45 31 Antisense
AGTAATTCCTCAGATGCGATGGCCC 424 61 57 Antisense
TCAGATGCGATGGCCCAGGCACGGA 266 623 66 Antisense
CAGGCACGGAAGGGATATTTTCGGA 395 207 81 Antisense
AACCGACATCTGGACGACACGTCGC 138 145 129 Antisense
CGCCGTAGCTCCTTTTGAGTGACGT 234 257 151 Antisense
GTAGCTCCTTTTGAGTGACGTTAAA 519 455 155 Antisense
AAAATTAGATCCTGTGTCAATATTA 56 135 203 Antisense
TTAGGACTCGAACCTGTTTAGTGAA 534 681 230 Antisense
ATCAAATTTTGAGCCTTCCCATTTT 164 25 262 Antisense
Sequence Source Affymetrix Proprietary Database