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[175026_at]

Description CEK101EXR_rc /REP_DB=TREMBL Accession /GB=D66495 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk101e10 : 3prime end, single read.
Cluster 6grp_total > 69      4grp_total > 29      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 3.5
(-3)
A 		16.7
(1.3)
A 		8.5
(-1.4)
A 		22.1
(3)
A 		19
B 37.3
(2.4)
A 		11.9
(-1.5)
A 		2.3
(-3)
A 		41.5
(3)
A 		39
C 23.9
(3)
A 		24
(3)
A 		6.3
(-2.1)
A 		3
(-3)
A 		21
avr 21.6
(2.8) 		17.5
(1.3) 		5.7
(-3) 		22.2
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 7.6
(3)
A 		2.8
(-3)
A 		5.9
(0.9)
A 		4
(-1.5)
A 		4.6
(-0.8)
A 		3.1
(-2.6)
A 		5
B 21.6
(0.9)
A 		2.6
(-3)
A 		7.9
(-1.9)
A 		8.8
(-1.7)
A 		25.6
(1.7)
A 		32.1
(3)
A 		30
C 9.6
(-2.1)
A 		3.8
(-2.8)
A 		2.2
(-3)
A 		10.3
(-2)
A 		6.1
(-2.5)
A 		49.5
(3)
A 		47
avr 12.9
(-0.7) 		3.1
(-3) 		5.3
(-2.5) 		7.7
(-1.9) 		12.1
(-0.8) 		28.2
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.3
(-3)
A 		3.6
(3)
A 		2.2
(-0.7)
A 		3.2
(2)
A 		2
B 11.9
(3)
A 		2.9
(-1.7)
A 		0.5
(-3)
A 		8.8
(1.4)
A 		11
C 7.9
(3)
A 		6.9
(2.2)
A 		2.2
(-1.6)
A 		0.5
(-3)
A 		7
avr 7
(3) 		4.5
(0.2) 		1.6
(-3) 		4.2
(-0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.4
(3)
A 		1
(-1)
A 		1.3
(2)
A 		1
(-1)
A 		1.4
(3)
A 		0.8
(-3)
A 		1
B 7.5
(0.6)
A 		0.9
(-3)
A 		1.9
(-2.5)
A 		2.3
(-2.2)
A 		10.4
(2.1)
A 		12
(3)
A 		11
C 3.6
(-1.9)
A 		1.2
(-2.8)
A 		0.6
(-3)
A 		2.1
(-2.4)
A 		2
(-2.5)
A 		16.6
(3)
A 		16
avr 4.2
(-0.8) 		1
(-3) 		1.3
(-2.8) 		1.8
(-2.5) 		4.6
(-0.5) 		9.8
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20596
Sequence Type Exemplar sequence
Representative Public ID CEK101EXR NCBI
Target Description CEK101EXR_rc /REP_DB=TREMBL Accession /GB=D66495 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk101e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK101EXR
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK101EXR CEK101EXR_rc /REP_DB=TREMBL Accession /GB=D66495 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk101e10 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064426 9/11 Negative Strand Matching Probes A 
NM_064427 9/11 Negative Strand Matching Probes A 
Y48E1C.1b 9/11 Negative Strand Matching Probes A 
Y48E1C.1a 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13420149-13420420(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175026_AT
tcattttcatcgtcttcttcttgaatcggagcaagtagtggagcattttgagaattcgga
gcacttggagcagcacggagcatcggagcaactgtgacgtcatccttttttcgttttctg
ggcttcccttttgtgccgccagaagtttcctgtgggcagtcaacgccagcaagctcacac
gctgcgcggagctggaaataaccattaagtgtgggcgtggcttgaaatttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTTCATCGTCTTCTTCTTGAA 673 619 22 Antisense
ATCGTCTTCTTCTTGAATCGGAGCA 335 35 30 Antisense
ATTCGGAGCACTTGGAGCAGCACGG 709 9 75 Antisense
GCAGCACGGAGCATCGGAGCAACTG 453 313 91 Antisense
GGAGCAACTGTGACGTCATCCTTTT 189 521 106 Antisense
TCATCCTTTTTTCGTTTTCTGGGCT 238 617 121 Antisense
CTTTTGTGCCGCCAGAAGTTTCCTG 606 221 149 Antisense
GAAGTTTCCTGTGGGCAGTCAACGC 613 335 163 Antisense
TGTGGGCAGTCAACGCCAGCAAGCT 240 553 172 Antisense
CACACGCTGCGCGGAGCTGGAAATA 15 195 197 Antisense
AGTGTGGGCGTGGCTTGAAATTTCG 445 57 229 Antisense
Sequence Source Affymetrix Proprietary Database