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[175022_s_at]

Description CEK112G4R_rc /REP_DB=TREMBL Accession /GB=D73019 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112g4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 03      4grp_highest_8_8 > 40      4grp_high_8_8 > 42      6grp_highest_nonorm > 03      6grp_total > 24      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2932
1 2 3 4 range
A 3803.3
(3)
P 		3658.6
(2.6)
P 		2499.5
(-0.9)
P 		1814.3
(-3)
P 		1989
B 4589.9
(3)
P 		3831
(1.4)
P 		3305
(0.2)
P 		1813.5
(-3)
P 		2776
C 4625.8
(3)
P 		3510.2
(0.7)
P 		2928.1
(-0.5)
P 		1693.8
(-3)
P 		2932
avr 4339.7
(3) 		3666.6
(1.4) 		2910.9
(-0.3) 		1773.9
(-3) 		2566

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3734
1 2 3 4 5 6 range
A 5122.6
(3)
P 		3147.7
(-0.2)
P 		4251.5
(1.6)
P 		1747.6
(-2.4)
P 		2257.2
(-1.6)
P 		1389.1
(-3)
P 		3734
B 4541.3
(3)
P 		4127.5
(2)
P 		3821.9
(1.2)
P 		2494.4
(-2)
P 		2523.1
(-2)
P 		2096.5
(-3)
P 		2445
C 4594.7
(3)
P 		4046.2
(1.9)
P 		2019.4
(-2.3)
P 		1754.4
(-2.8)
P 		1664.2
(-3)
P 		2118.9
(-2.1)
P 		2931
avr 4752.9
(3) 		3773.8
(1) 		3364.3
(0.1) 		1998.8
(-2.7) 		2148.2
(-2.4) 		1868.2
(-3) 		2885
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1266
1 2 3 4 range
A 1384.8
(3)
P 		794.2
(-0.2)
P 		653.4
(-0.9)
P 		265.6
(-3)
P 		1119
B 1463.7
(3)
P 		946.2
(0.1)
P 		765.8
(-0.9)
P 		386.5
(-3)
P 		1077
C 1531.3
(3)
P 		1009.2
(0.5)
P 		1020.5
(0.5)
P 		285.6
(-3)
P 		1246
avr 1459.9
(3) 		916.5
(0.2) 		813.2
(-0.4) 		312.6
(-3) 		1147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1365
1 2 3 4 5 6 range
A 944.3
(1.7)
P 		1119.5
(3)
P 		925.9
(1.5)
P 		443.2
(-2.2)
P 		681.1
(-0.4)
P 		338.2
(-3)
P 		781
B 1580.1
(3)
P 		1373.9
(1.7)
P 		928.1
(-1.3)
P 		660.7
(-3)
P 		1025.1
(-0.6)
P 		781.8
(-2.2)
P 		919
C 1703.1
(3)
P 		1234.6
(0.9)
P 		514
(-2.3)
P 		352.8
(-3)
P 		538.5
(-2.2)
P 		709.3
(-1.4)
P 		1350
avr 1409.2
(3) 		1242.7
(1.9) 		789.3
(-1) 		485.6
(-3) 		748.2
(-1.3) 		609.8
(-2.2) 		924
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175022_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20577
Sequence Type Exemplar sequence
Representative Public ID CEK112G4R NCBI
Target Description CEK112G4R_rc /REP_DB=TREMBL Accession /GB=D73019 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027187(11), NM_001027186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027187 NCBI Caenorhabditis elegans T24B8.3b (T24B8.3) mRNA, complete cds. 11/11 None
NM_001027186 NCBI Caenorhabditis elegans T24B8.3a (T24B8.3) mRNA, complete cds. 11/11 None
T24B8.3b.1 ENSEMBL cdna:known chromosome:CEL140:II:9059299:9061023:-1 gene:T24B8.3 11/11 A 
T24B8.3b.2 ENSEMBL cdna:known chromosome:CEL140:II:9059299:9061023:-1 gene:T24B8.3 11/11 A 
T24B8.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:9059311:9061047:-1 gene:T24B8.3 11/11 None
T24B8.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:9059311:9061049:-1 gene:T24B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9059324-9059663(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24B8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92760 Hypothetical protein T24B8.3a [Caenorhabditis elegans] ref|NP_001022357.1| T24B8.3a [Caenorhabditis elegans] 1.0E-18
blast CAE48509 Hypothetical protein T24B8.3b [Caenorhabditis elegans] ref|NP_001022358.1| T24B8.3b [Caenorhabditis elegans] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:175022_S_AT
atctgtcacaaaatcaattactcccaaaaaacctcttcatttttcttttaattgttgaac
atcctatgtacctgtttcttgaaagaaattgttcgttctccttcccgttttggtgtctgc
caccctaattttttaactgtttttgagccttcttccctgatcctctccatctctttttca
tttatctttctctatgatagtttttgaaaagagtagtctgtgaaaaggcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGTCACAAAATCAATTACTCCC 247 33 26 Antisense
GTCACAAAATCAATTACTCCCAAAA 129 465 30 Antisense
CTCTTCATTTTTCTTTTAATTGTTG 683 229 58 Antisense
AATTGTTGAACATCCTATGTACCTG 239 179 75 Antisense
GAACATCCTATGTACCTGTTTCTTG 62 351 82 Antisense
TCCTATGTACCTGTTTCTTGAAAGA 455 591 87 Antisense
TTTTGGTGTCTGCCACCCTAATTTT 405 677 133 Antisense
GTCTGCCACCCTAATTTTTTAACTG 492 469 140 Antisense
TCCATCTCTTTTTCATTTATCTTTC 447 591 191 Antisense
CATTTATCTTTCTCTATGATAGTTT 481 215 204 Antisense
AAAGAGTAGTCTGTGAAAAGGCCTT 520 93 233 Antisense
Sequence Source Affymetrix Proprietary Database