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[175021_at]

Description CEK088AXR_rc /REP_DB=TREMBL Accession /GB=D64744 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 55      6grp_total > 61      4grp_total > 31      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 626
1 2 3 4 range
A 1006.9
(3)
P 		1002.3
(2.9)
P 		619.5
(-3)
P 		886.6
(1.1)
P 		387
B 930.1
(0.4)
P 		717.5
(-3)
P 		736.9
(-2.7)
P 		1090
(3)
P 		373
C 1245.3
(3)
P 		655.2
(-3)
P 		982.3
(0.3)
P 		778.3
(-1.7)
P 		590
avr 1060.8
(3) 		791.7
(-2.7) 		779.6
(-3) 		918.3
(-0) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1388
1 2 3 4 5 6 range
A 1267.1
(-1.9)
P 		1421.7
(-0.4)
P 		1795.2
(3)
P 		1366.3
(-1)
P 		1552.6
(0.8)
P 		1143.8
(-3)
P 		651
B 1455
(-2.1)
P 		1585.8
(-1.4)
P 		1563.2
(-1.5)
P 		2531.5
(3)
P 		1500.4
(-1.8)
P 		1254.2
(-3)
P 		1277
C 1173.4
(-3)
P 		1658.9
(0.4)
P 		2031.6
(3)
P 		1790.6
(1.3)
P 		1471.1
(-0.9)
P 		1493.5
(-0.8)
P 		858
avr 1298.5
(-3) 		1555.5
(-0.4) 		1796.7
(2) 		1896.1
(3) 		1508
(-0.9) 		1297.2
(-3) 		599
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 366.6
(3)
P 		217.6
(-0.8)
P 		162
(-2.2)
P 		129.8
(-3)
P 		237
B 296.6
(3)
P 		177.2
(-2.7)
P 		170.8
(-3)
P 		232.3
(-0.1)
P 		126
C 412.2
(3)
P 		188.4
(-1.8)
P 		342.4
(1.5)
P 		131.2
(-3)
P 		281
avr 358.5
(3) 		194.4
(-2.1) 		225.1
(-1.1) 		164.4
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 233.6
(-3)
P 		505.6
(3)
P 		391
(0.5)
P 		346.5
(-0.5)
P 		468.5
(2.2)
P 		278.5
(-2)
P 		272
B 506.3
(-0.4)
P 		527.8
(0.1)
P 		379.6
(-3)
P 		670.5
(3)
P 		609.6
(1.7)
P 		467.7
(-1.2)
P 		291
C 434.9
(-0.1)
P 		506.2
(2.6)
P 		517.1
(3)
P 		360.1
(-3)
P 		476
(1.4)
P 		500
(2.3)
P 		157
avr 391.6
(-3) 		513.2
(2.8) 		429.2
(-1.2) 		459
(0.2) 		518
(3) 		415.4
(-1.9) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22414
Sequence Type Exemplar sequence
Representative Public ID CEK088AXR NCBI
Target Description CEK088AXR_rc /REP_DB=TREMBL Accession /GB=D64744 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075979(11), NM_075978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075979 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-4) (acl-4) mRNA, complete cds. 11/11 None
NM_075978 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-4) (acl-4) mRNA, complete cds. 11/11 None
F49H12.6b ENSEMBL cdna:known chromosome:CEL140:X:2066548:2070435:-1 gene:F49H12.6 11/11 A 
F49H12.6a ENSEMBL cdna:known chromosome:CEL140:X:2066550:2070437:-1 gene:F49H12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2066581-2066910(-) 98.8 98.8
Public Domain and Genome References
Ensembl F49H12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39832 Acyltransferase-like protein 4, isoform b [Caenorhabditis elegans] ref|NP_508380.2| ACyLtransferase-like family member (acl-4) [Caenorhabditis elegans] 0.0
blast AAF39831 Acyltransferase-like protein 4, isoform a [Caenorhabditis elegans] ref|NP_508379.1| ACyLtransferase-like family member (acl-4) [Caenorhabditis elegans] 0.0
blast CAE68361 Hypothetical protein CBG14100 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.4E-33
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.4E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508380.2 2 31-53,60-82
NP_508379.1 2 10-32,269-291
F49H12.6b 2 31-53,60-82
F49H12.6a 2 10-32,269-291
Sequence
Target Sequence 
>C. ELEGANS:175021_AT
gggttccattcttacggataacatcaagagttttcaattctctcattagtatcatgtcaa
atcaaccataacttgtttgtttctttttcaaatcagatgacgttgacgtctacgttttat
acaactctctagcagctcttatttttgattctacagcacgtgtttttgtcccccaccctc
ccccactaatgtcttgtcttgtgtagaattatcgaggtctaatttttcaggaaagtgcgt
tgtagtccacattaggtagtcactgatttattgacgggttatttacagccgattccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTCCATTCTTACGGATAACATC 628 495 15 Antisense
AGTTTTCAATTCTCTCATTAGTATC 313 63 43 Antisense
AATCAACCATAACTTGTTTGTTTCT 228 171 74 Antisense
GACGTCTACGTTTTATACAACTCTC 485 377 119 Antisense
TATACAACTCTCTAGCAGCTCTTAT 330 661 132 Antisense
GCAGCTCTTATTTTTGATTCTACAG 704 313 146 Antisense
ATTCTACAGCACGTGTTTTTGTCCC 286 11 162 Antisense
TCCCCCACTAATGTCTTGTCTTGTG 256 597 193 Antisense
GGAAAGTGCGTTGTAGTCCACATTA 694 523 244 Antisense
GTCCACATTAGGTAGTCACTGATTT 362 477 259 Antisense
GACGGGTTATTTACAGCCGATTCCG 399 375 287 Antisense
Sequence Source Affymetrix Proprietary Database