[Home] | [Total List]

[175019_at]

Description CEK117D8R_rc /REP_DB=TREMBL Accession /GB=D73330 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk117d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 88      6grp_total > 96      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1254
1 2 3 4 range
A 1612.8
(0)
P 		996.8
(-3)
P 		1181.1
(-2.1)
P 		2211.5
(3)
P 		1215
B 1771.2
(0.4)
P 		1193.4
(-2.7)
P 		1145.2
(-3)
P 		2250.4
(3)
P 		1105
C 1463.5
(-0.9)
P 		1058.8
(-3)
P 		1225.2
(-2.1)
P 		2221.4
(3)
P 		1163
avr 1615.8
(-0.2) 		1083
(-3) 		1183.8
(-2.5) 		2227.8
(3) 		1145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1490
1 2 3 4 5 6 range
A 968.2
(-3)
P 		1116.8
(-2.3)
P 		986.6
(-2.9)
P 		1432.3
(-0.8)
P 		1511.6
(-0.4)
P 		2222
(3)
P 		1254
B 900.6
(-1.7)
P 		755.9
(-2.8)
P 		732.5
(-3)
P 		1395.5
(2.1)
P 		1467.1
(2.7)
P 		1507.3
(3)
P 		775
C 1334.2
(0.1)
P 		764.6
(-3)
P 		1375.2
(0.4)
P 		938.2
(-2)
P 		1854.3
(3)
P 		1477.4
(0.9)
P 		1090
avr 1067.7
(-1.7) 		879.1
(-3) 		1031.4
(-1.9) 		1255.3
(-0.4) 		1611
(2.1) 		1735.6
(3) 		857
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 587.2
(3)
P 		216.4
(-3)
P 		308.8
(-1.5)
P 		323.7
(-1.3)
P 		371
B 564.8
(3)
P 		294.7
(-2.4)
P 		265.4
(-3)
P 		479.6
(1.3)
P 		299
C 484.4
(3)
P 		304.4
(-3)
P 		427
(1.1)
P 		374.6
(-0.7)
P 		180
avr 545.5
(3) 		271.8
(-3) 		333.7
(-1.6) 		392.6
(-0.4) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 178.5
(-3)
P 		397.2
(0.6)
P 		214.9
(-2.4)
P 		363.3
(0.1)
P 		456.1
(1.6)
P 		541
(3)
P 		363
B 313.4
(-1.1)
P 		251.6
(-1.9)
P 		177.9
(-3)
P 		369.6
(-0.2)
P 		596.1
(3)
P 		562.1
(2.5)
P 		418
C 494.5
(1.5)
P 		233.3
(-2.3)
P 		350
(-0.6)
P 		188.7
(-3)
P 		600
(3)
P 		494.6
(1.5)
P 		411
avr 328.8
(-1.4) 		294
(-2.1) 		247.6
(-3) 		307.2
(-1.8) 		550.7
(3) 		532.6
(2.6) 		303
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22030
Sequence Type Exemplar sequence
Representative Public ID CEK117D8R NCBI
Target Description CEK117D8R_rc /REP_DB=TREMBL Accession /GB=D73330 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk117d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071861 NCBI Caenorhabditis elegans K03B4.2 (K03B4.2) mRNA, complete cds. 11/11 None
K03B4.2 ENSEMBL cdna:known chromosome:CEL140:V:4687808:4689035:1 gene:K03B4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4688688-4689024(+) 91.37 100.0
Public Domain and Genome References
Gene Title
Ensembl K03B4.2
Entrez Gene 178858 Entrez gene
SwissProt Q21173 EMBL-EBI
WormBase CE07322 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97997 Hypothetical protein K03B4.2 [Caenorhabditis elegans] ref|NP_504262.1| K03B4.2 [Caenorhabditis elegans] 3.0E-55
blast CAE64172 Hypothetical protein CBG08795 [Caenorhabditis briggsae] 8.0E-38
Sequence
Target Sequence 
>C. ELEGANS:175019_AT
attcccatgatgatgtcccagtgtcgccgtttcaattgtttaaataatttaattttaaaa
aattttaccgttaaactccttgttataacttttttgtgaagtagtatatgtgtacattca
ctcgctgtaaatttaatttgcctagtttctttttcgtttgttttttttctgttaattttt
cacgtttaattttccacacacacacggctttttagttcggatattatttcaatcccctgt
tcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCCATGATGATGTCCCAGTGTC 393 9 13 Antisense
CCAGTGTCGCCGTTTCAATTGTTTA 332 271 30 Antisense
GTGTCGCCGTTTCAATTGTTTAAAT 52 469 33 Antisense
GTATATGTGTACATTCACTCGCTGT 46 455 116 Antisense
ACATTCACTCGCTGTAAATTTAATT 159 105 126 Antisense
TGTAAATTTAATTTGCCTAGTTTCT 213 559 138 Antisense
TTCACGTTTAATTTTCCACACACAC 358 687 191 Antisense
TTTCCACACACACACGGCTTTTTAG 89 667 203 Antisense
CCACACACACACGGCTTTTTAGTTC 80 275 206 Antisense
CACACGGCTTTTTAGTTCGGATATT 46 195 213 Antisense
GGATATTATTTCAATCCCCTGTTCC 77 509 231 Antisense
Sequence Source Affymetrix Proprietary Database