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[175018_at]

Description CEK049EZR_rc /REP_DB=TREMBL Accession /GB=D64324 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk49e12 : 3prime end, single read.
Cluster 6grp_total > 89      4grp_total > 12      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 18.4
(-0.3)
A 		27.1
(1.1)
A 		2.5
(-3)
A 		38.4
(3)
A 		36
B 22.5
(-0.1)
A 		26
(0.5)
A 		7.2
(-3)
A 		39.1
(3)
A 		32
C 22.7
(-1.3)
A 		2.2
(-3)
A 		10.3
(-2.3)
A 		75.6
(3)
P 		73
avr 21.2
(-1) 		18.4
(-1.4) 		6.7
(-3) 		51
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 10.8
(-2.6)
A 		16.1
(-2.2)
A 		17.2
(-2.2)
A 		3.9
(-3)
A 		73.5
(1.4)
P 		99.1
(3)
P 		95
B 26.8
(-2)
A 		17.1
(-3)
A 		22.3
(-2.4)
A 		19.3
(-2.8)
A 		38.4
(-0.7)
A 		73.8
(3)
P 		57
C 14.6
(-2.5)
A 		24
(-2)
A 		16.8
(-2.4)
A 		5.3
(-3)
A 		83.1
(1.1)
P 		120
(3)
P 		115
avr 17.4
(-2.5) 		19.1
(-2.3) 		18.8
(-2.4) 		9.5
(-3) 		65
(0.8) 		97.6
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.7
(3)
A 		5.9
(2.2)
A 		0.7
(-3)
A 		5.6
(1.9)
A 		6
B 7.2
(2)
A 		6.4
(1.3)
A 		1.7
(-3)
A 		8.3
(3)
A 		7
C 7.5
(0.4)
A 		0.6
(-3)
A 		3.6
(-1.5)
A 		12.7
(3)
P 		12
avr 7.1
(1.4) 		4.3
(-1) 		2
(-3) 		8.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 2
(-2.7)
A 		5.7
(-1.8)
A 		3.8
(-2.3)
A 		1
(-3)
A 		22.2
(2.5)
P 		24.1
(3)
P 		23
B 9.3
(-1.9)
A 		5.7
(-2.8)
A 		5.4
(-2.9)
A 		5.1
(-3)
A 		15.6
(-0.2)
A 		27.5
(3)
P 		22
C 5.4
(-2.3)
A 		7.3
(-2)
A 		4.3
(-2.5)
A 		1.1
(-3)
A 		26.9
(1)
P 		40.2
(3)
P 		39
avr 5.6
(-2.3) 		6.2
(-2.2) 		4.5
(-2.6) 		2.4
(-3) 		21.6
(1.1) 		30.6
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22451
Sequence Type Exemplar sequence
Representative Public ID CEK049EZR NCBI
Target Description CEK049EZR_rc /REP_DB=TREMBL Accession /GB=D64324 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk49e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075909 NCBI Caenorhabditis elegans C36C9.1 (C36C9.1) mRNA, complete cds. 11/11 None
C36C9.1 ENSEMBL cdna:known chromosome:CEL140:X:1682951:1686378:1 gene:C36C9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1686208-1686368(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C9.1
Entrez Gene 180497 Entrez gene
SwissProt Q9TZK8 EMBL-EBI
WormBase CE19720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508310 C36C9.1 [Caenorhabditis elegans] gb|AAC67424.1| Hypothetical protein C36C9.1 [Caenorhabditis elegans] 0.0
blast AAC78155 Gex interacting protein protein 12 [Caenorhabditis elegans] ref|NP_508367.1| GEX Interacting protein family member (gei-12) [Caenorhabditis elegans] 0.0
blast AAC78158 Hypothetical protein F52D2.6 [Caenorhabditis elegans] ref|NP_508365.1| F52D2.6 [Caenorhabditis elegans] 2.0E-88
Sequence
Target Sequence 
>C. ELEGANS:175018_AT
gatatatatctatttcatgtcgagtattttgtattttattcttgttcattgaccttttaa
ccactctttttatactccaacttgctccttcttgtgaatttatttatggtctgcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATATATCTATTTCATGTCGAGT 178 427 15 Antisense
ATTTCATGTCGAGTATTTTGTATTT 534 15 26 Antisense
TTTTGTATTTTATTCTTGTTCATTG 73 679 41 Antisense
ATTTTATTCTTGTTCATTGACCTTT 216 15 47 Antisense
TCTTGTTCATTGACCTTTTAACCAC 491 615 54 Antisense
GTTCATTGACCTTTTAACCACTCTT 381 443 58 Antisense
TCATTGACCTTTTAACCACTCTTTT 256 619 60 Antisense
TAACCACTCTTTTTATACTCCAACT 47 639 72 Antisense
CCAACTTGCTCCTTCTTGTGAATTT 32 277 91 Antisense
ACTTGCTCCTTCTTGTGAATTTATT 609 103 94 Antisense
GTGAATTTATTTATGGTCTGCCCAG 125 481 108 Antisense
Sequence Source Affymetrix Proprietary Database