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[175017_s_at]

Description CEK110G5R_rc /REP_DB=TREMBL Accession /GB=D72885 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk110g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 69      6grp_total > 84      4grp_total > 01      6grp_highest_sub > In      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 691
1 2 3 4 range
A 1024.9
(-3)
P 		1101.8
(-2.3)
P 		1109.7
(-2.2)
P 		1664.6
(3)
P 		640
B 1139
(-1.4)
P 		993.6
(-3)
P 		1067.1
(-2.2)
P 		1539.2
(3)
P 		546
C 1143.4
(-2.3)
P 		1072.8
(-3)
P 		1163.8
(-2.1)
P 		1684.7
(3)
P 		612
avr 1102.4
(-2.5) 		1056.1
(-3) 		1113.5
(-2.4) 		1629.5
(3) 		573

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1849
1 2 3 4 5 6 range
A 1492.4
(-2.7)
P 		1434.6
(-3)
P 		2513.9
(2.5)
P 		2503.8
(2.5)
P 		2609.4
(3)
P 		2250.2
(1.2)
P 		1175
B 1479.1
(-2.6)
P 		1360
(-3)
P 		1917
(-1.2)
P 		2574.5
(0.9)
P 		3208.6
(3)
P 		2981.3
(2.3)
P 		1849
C 1396.6
(-2.9)
P 		1377.1
(-3)
P 		2152
(-0.2)
P 		2621
(1.5)
P 		2964.4
(2.8)
P 		3017.6
(3)
P 		1641
avr 1456
(-2.7) 		1390.6
(-3) 		2194.3
(0.1) 		2566.4
(1.6) 		2927.5
(3) 		2749.7
(2.3) 		1537
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 373.2
(3)
P 		239.2
(-3)
P 		290.1
(-0.7)
P 		243.7
(-2.8)
P 		134
B 363.2
(3)
P 		245.4
(-3)
P 		247.3
(-2.9)
P 		328
(1.2)
P 		118
C 378.5
(1.7)
P 		308.4
(-1.8)
P 		405.6
(3)
P 		284.1
(-3)
P 		122
avr 371.6
(3) 		264.3
(-3) 		314.3
(-0.2) 		285.3
(-1.8) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1029
1 2 3 4 5 6 range
A 275.1
(-3)
P 		510.2
(-0.2)
P 		547.5
(0.2)
P 		635
(1.2)
P 		787.4
(3)
P 		547.8
(0.2)
P 		512
B 514.7
(-2.6)
P 		452.7
(-3)
P 		465.5
(-2.9)
P 		681.9
(-1.4)
P 		1303.6
(3)
P 		1111.7
(1.6)
P 		851
C 517.7
(-2)
P 		420.2
(-3)
P 		547.7
(-1.7)
P 		527.1
(-1.9)
P 		959.2
(2.5)
P 		1010.2
(3)
P 		590
avr 435.8
(-3) 		461
(-2.7) 		520.2
(-2.1) 		614.7
(-1.2) 		1016.7
(3) 		889.9
(1.7) 		581
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175017_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20698
Sequence Type Exemplar sequence
Representative Public ID CEK110G5R NCBI
Target Description CEK110G5R_rc /REP_DB=TREMBL Accession /GB=D72885 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk110g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062843(11), NM_062844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062843 NCBI Caenorhabditis elegans T24H7.5b (ATPase) mRNA, complete cds. 11/11 A 
NM_062844 NCBI Caenorhabditis elegans T24H7.5c (ATPase) mRNA, complete cds. 11/11 A 
SNAP00000030996 ENSEMBL cdna:SNAP chromosome:CEL140:II:6234536:6235446:-1 11/11 None
GENEFINDER00000031006 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6234536:6236096:-1 11/11 None
T24H7.5b ENSEMBL cdna:known chromosome:CEL140:II:6234441:6244182:-1 gene:T24H7.5 11/11 A 
T24H7.5c.1 ENSEMBL cdna:known chromosome:CEL140:II:6234536:6235454:-1 gene:T24H7.5 11/11 None
T24H7.5c.2 ENSEMBL cdna:known chromosome:CEL140:II:6234536:6236227:-1 gene:T24H7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174031 3 2 NM_062843 172707_x_at (11), 175017_s_at (11), 188289_s_at (11)
NM_062844 175017_s_at (11), 188289_s_at (11)
NM_062845 172707_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6234447-6234957(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24H7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD31557 Hypothetical protein T24H7.5b [Caenorhabditis elegans] ref|NP_495244.1| T24H7.5b [Caenorhabditis elegans] 0.0
blast AAD31556 Hypothetical protein T24H7.5a [Caenorhabditis elegans] ref|NP_495246.1| T24H7.5a [Caenorhabditis elegans] pir||D88175 protein T24H7.5a [imported] - Caenorhabditis elegans 0.0
blast CAE59269 Hypothetical protein CBG02601 [Caenorhabditis briggsae] 0.0
blast AAD31557 Hypothetical protein T24H7.5b [Caenorhabditis elegans] ref|NP_495244.1| T24H7.5b [Caenorhabditis elegans] 1.0E-132
blast AAD31558 Hypothetical protein T24H7.5c [Caenorhabditis elegans] ref|NP_495245.1| T24H7.5c [Caenorhabditis elegans] 1.0E-120
blast AAD31557 Hypothetical protein T24H7.5b [Caenorhabditis elegans] ref|NP_495244.1| T24H7.5b [Caenorhabditis elegans] 1.0E-120
Protein Families
Method ID Description E-Value
ec A10B_HUMAN (O94823) Potential phospholipid-transporting ATPase VB (EC 3.6.3.1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495244.1 11 91-108,112-129,317-339,364-386,993-1015,1025-1047,1077-1099,1109-1131,1138-1160,1180-1194,1215-1234
NP_495245.1 1 4-21
T24H7.5b 11 91-108,112-129,317-339,364-386,993-1015,1025-1047,1077-1099,1109-1131,1138-1160,1180-1194,1215-1234
T24H7.5c.1 1 4-21
T24H7.5c.2 1 4-21
SNAP00000030996 1 4-21
GENEFINDER00000031006 1 28-47
Sequence
Target Sequence 
>C. ELEGANS:175017_S_AT
agttctacaccaacaccgaaatcaatgtcattttcccattggacaacgccaacgagtttc
tcgtgaaagattaccaatcgatcgacaagcttgagagtgaagccgccaagaaaagatttg
actcatccgaggaggacagcgagagtgagccagaaggagctgaggagccagccacagagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCTACACCAACACCGAAATCAA 458 63 37 Antisense
ACCGAAATCAATGTCATTTTCCCAT 196 89 51 Antisense
GTCATTTTCCCATTGGACAACGCCA 251 467 63 Antisense
GGACAACGCCAACGAGTTTCTCGTG 680 525 77 Antisense
TACCAATCGATCGACAAGCTTGAGA 83 649 108 Antisense
CAAGCTTGAGAGTGAAGCCGCCAAG 325 185 122 Antisense
AGCCGCCAAGAAAAGATTTGACTCA 693 81 137 Antisense
TTGACTCATCCGAGGAGGACAGCGA 186 703 154 Antisense
GGAGGACAGCGAGAGTGAGCCAGAA 283 515 167 Antisense
GTGAGCCAGAAGGAGCTGAGGAGCC 215 481 181 Antisense
GGAGCTGAGGAGCCAGCCACAGAGG 242 521 192 Antisense
Sequence Source Affymetrix Proprietary Database