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[175016_s_at]

Description CEK037AXR_rc /REP_DB=TREMBL Accession /GB=D33842 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk37a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_high_8_8 > 54      6grp_highest_nonorm > 66      6grp_total > 09      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1748
1 2 3 4 range
A 148.9
(-2.7)
P 		1535.3
(2.9)
P 		1561
(3)
P 		73.3
(-3)
A 		1488
B 143.1
(-2.6)
P 		1600.7
(3)
P 		1563.3
(2.9)
P 		51.8
(-3)
P 		1549
C 173.9
(-2.8)
P 		1612.2
(2.3)
P 		1800
(3)
P 		120.2
(-3)
P 		1680
avr 155.3
(-2.7) 		1582.7
(2.8) 		1641.4
(3) 		81.8
(-3) 		1560

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1190
1 2 3 4 5 6 range
A 1790.1
(3)
P 		1173.4
(-0.7)
P 		1233.6
(-0.4)
P 		1595.1
(1.8)
P 		1791.6
(3)
P 		797.8
(-3)
P 		994
B 1918.6
(2.6)
P 		1106.9
(-2.1)
P 		1337
(-0.8)
P 		1987.6
(3)
P 		1502.1
(0.2)
P 		950.1
(-3)
P 		1038
C 1734.1
(3)
P 		1216.8
(-0.4)
P 		1341.2
(0.4)
P 		1540.7
(1.7)
P 		1536
(1.7)
P 		820.8
(-3)
P 		913
avr 1814.3
(3) 		1165.7
(-1.1) 		1303.9
(-0.2) 		1707.8
(2.3) 		1609.9
(1.7) 		856.2
(-3) 		958
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 617
1 2 3 4 range
A 54.2
(-2.3)
P 		333.3
(1.9)
P 		408.1
(3)
P 		10.7
(-3)
A 		397
B 45.6
(-2.5)
P 		395.3
(3)
P 		362.2
(2.5)
P 		11
(-3)
P 		384
C 57.5
(-2.6)
P 		463.5
(1.4)
P 		627.4
(3)
P 		20.3
(-3)
P 		607
avr 52.4
(-2.5) 		397.4
(2.1) 		465.9
(3) 		14
(-3) 		452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 330
(-0.6)
P 		417.3
(0.9)
P 		268.7
(-1.7)
P 		404.6
(0.6)
P 		540.6
(3)
P 		194.2
(-3)
P 		346
B 667.6
(3)
P 		368.4
(-2.2)
P 		324.7
(-3)
P 		526.4
(0.5)
P 		610.3
(2)
P 		354.3
(-2.5)
P 		343
C 642.8
(3)
P 		371.3
(-1.4)
P 		341.4
(-1.9)
P 		309.8
(-2.4)
P 		497
(0.6)
P 		274.8
(-3)
P 		368
avr 546.8
(2.9) 		385.7
(-0.6) 		311.6
(-2.2) 		413.6
(0) 		549.3
(3) 		274.4
(-3) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175016_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20905
Sequence Type Exemplar sequence
Representative Public ID CEK037AXR NCBI
Target Description CEK037AXR_rc /REP_DB=TREMBL Accession /GB=D33842 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk37a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066551 NCBI Caenorhabditis elegans F44E2.4 (F44E2.4) mRNA, complete cds. 11/11 None
F44E2.4 ENSEMBL cdna:known chromosome:CEL140:III:8832392:8838326:-1 gene:F44E2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8832397-8832782(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44E2.4
Entrez Gene 176243 Entrez gene
SwissProt P34434 EMBL-EBI
WormBase CE28232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67236 Hypothetical protein F44E2.4 [Caenorhabditis elegans] ref|NP_498952.1| F44E2.4 [Caenorhabditis elegans] sp|P34434|YL54_CAEEL Hypothetical protein F44E2.4 in chromosome III 0.0
blast CAE62742 Hypothetical protein CBG06905 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.1E-13
Sequence
Target Sequence 
>C. ELEGANS:175016_S_AT
ctccattctcaccgttgattgtgatgtcattgcacatcgatttatttctcatactggtca
attttcattgtttttttttaatattctttgttcaactattttatcttcataatttcccca
aaatgctccacttcttcccaaacctttttacagatcttctgcagggtttcttaacctttt
ttcttctctacttttaatcacattttcgccaacttccacgtgtatacggtgtgctacatt
atttgatagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCATTCTCACCGTTGATTGTGAT 444 235 118 Antisense
CACCGTTGATTGTGATGTCATTGCA 560 201 127 Antisense
GTCATTGCACATCGATTTATTTCTC 92 469 143 Antisense
GCACATCGATTTATTTCTCATACTG 235 317 149 Antisense
TTTCTCATACTGGTCAATTTTCATT 227 671 162 Antisense
TCTTCTGCAGGGTTTCTTAACCTTT 97 613 272 Antisense
TTTTTCTTCTCTACTTTTAATCACA 548 675 295 Antisense
TTTAATCACATTTTCGCCAACTTCC 493 673 310 Antisense
CGCCAACTTCCACGTGTATACGGTG 518 255 324 Antisense
CTTCCACGTGTATACGGTGTGCTAC 195 215 330 Antisense
ACGGTGTGCTACATTATTTGATAGG 61 97 343 Antisense
Sequence Source Affymetrix Proprietary Database