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[175015_at]

Description CEK037AXR_rc /REP_DB=TREMBL Accession /GB=D33842 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk37a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      6grp_highest_nonorm > 31      6grp_total > 80      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1311
1 2 3 4 range
A 76.4
(-2.9)
P 		909.9
(1.8)
P 		1115
(3)
P 		52.1
(-3)
A 		1063
B 67
(-2.9)
M 		1201.8
(2.6)
P 		1293.8
(3)
P 		41.5
(-3)
A 		1252
C 58.3
(-2.9)
M 		1211.3
(2.4)
P 		1351.7
(3)
P 		40.6
(-3)
A 		1311
avr 67.2
(-2.9) 		1107.7
(2.3) 		1253.5
(3) 		44.7
(-3) 		1209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1236
1 2 3 4 5 6 range
A 955.2
(0.9)
P 		922.2
(0.6)
P 		865.2
(0.2)
P 		1219.3
(2.9)
P 		1228.9
(3)
P 		456.7
(-3)
P 		772
B 1548.1
(2.5)
P 		873.8
(-0.7)
P 		1025.7
(-0)
P 		1644.5
(3)
P 		820.2
(-1)
P 		408.1
(-3)
P 		1236
C 1421.1
(3)
P 		796.6
(-0.8)
P 		1108.7
(1.1)
P 		1300
(2.3)
P 		1040.1
(0.7)
P 		438.1
(-3)
P 		983
avr 1308.1
(2.5) 		864.2
(-0.3) 		999.9
(0.6) 		1387.9
(3) 		1029.7
(0.7) 		434.3
(-3) 		954
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 27.8
(-2.6)
P 		197.5
(1)
P 		291.5
(3)
P 		7.6
(-3)
A 		284
B 21.4
(-2.7)
M 		296.8
(2.9)
P 		299.8
(3)
P 		8.8
(-3)
A 		291
C 19.3
(-2.8)
M 		348.2
(1.4)
P 		471.1
(3)
P 		6.8
(-3)
A 		464
avr 22.8
(-2.7) 		280.8
(1.7) 		354.1
(3) 		7.7
(-3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 176.1
(-1.5)
P 		328
(2)
P 		188.4
(-1.2)
P 		309.3
(1.6)
P 		370.8
(3)
P 		111.2
(-3)
P 		260
B 538.7
(3)
P 		290.9
(-0.8)
P 		249.1
(-1.5)
P 		435.6
(1.4)
P 		333.3
(-0.2)
P 		152.2
(-3)
P 		387
C 526.8
(3)
P 		243.1
(-1.5)
P 		282.2
(-0.9)
P 		261.4
(-1.2)
P 		336.6
(-0)
P 		146.7
(-3)
P 		380
avr 413.9
(3) 		287.3
(0.3) 		239.9
(-0.8) 		335.4
(1.3) 		346.9
(1.5) 		136.7
(-3) 		277
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20905
Sequence Type Exemplar sequence
Representative Public ID CEK037AXR NCBI
Target Description CEK037AXR_rc /REP_DB=TREMBL Accession /GB=D33842 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk37a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066551 NCBI Caenorhabditis elegans F44E2.4 (F44E2.4) mRNA, complete cds. 11/11 None
F44E2.4 ENSEMBL cdna:known chromosome:CEL140:III:8832392:8838326:-1 gene:F44E2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040000 5/11 Cross Hyb Matching Probes None
GENEFINDER00000040010 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8832397-8832782(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44E2.4
Entrez Gene 176243 Entrez gene
SwissProt P34434 EMBL-EBI
WormBase CE28232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67236 Hypothetical protein F44E2.4 [Caenorhabditis elegans] ref|NP_498952.1| F44E2.4 [Caenorhabditis elegans] sp|P34434|YL54_CAEEL Hypothetical protein F44E2.4 in chromosome III 0.0
blast CAE62742 Hypothetical protein CBG06905 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.1E-13
Sequence
Target Sequence 
>C. ELEGANS:175015_AT
gaaacgacacaaagtcctccagttcaatcttctgtatcattccacattattctggcagca
cttattccattttttgcccttttctaggtgctttcttgctccattctcaccgttgattgt
gatgtcattgcacatcgatttatttctcatactggtcaattttcattgtttttttttaat
attctttgttcaactattttatcttcataatttccccaaaatgctccacttcttcccaaa
cctttttacagatcttctgcaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGACACAAAGTCCTCCAGTTC 538 347 20 Antisense
AAGTCCTCCAGTTCAATCTTCTGTA 612 157 31 Antisense
CAATCTTCTGTATCATTCCACATTA 238 181 44 Antisense
TTCCACATTATTCTGGCAGCACTTA 237 699 59 Antisense
GCAGCACTTATTCCATTTTTTGCCC 401 313 74 Antisense
CATTTTTTGCCCTTTTCTAGGTGCT 622 215 87 Antisense
TTTTTAATATTCTTTGTTCAACTAT 492 675 192 Antisense
CTATTTTATCTTCATAATTTCCCCA 605 223 213 Antisense
ATAATTTCCCCAAAATGCTCCACTT 375 25 226 Antisense
TCTTCCCAAACCTTTTTACAGATCT 96 611 250 Antisense
ACCTTTTTACAGATCTTCTGCAGGG 316 87 259 Antisense
Sequence Source Affymetrix Proprietary Database