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[175014_at]

Description CEK116F3R_rc /REP_DB=TREMBL Accession /GB=D73278 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116f3 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 3.9
(-2.8)
A 		1.7
(-3)
A 		45.6
(1.9)
A 		55.7
(3)
A 		54
B 18.1
(-3)
A 		53.9
(3)
A 		44.3
(1.4)
P 		29.2
(-1.1)
A 		36
C 39.3
(-0.7)
A 		15.4
(-3)
A 		38.5
(-0.8)
P 		77.4
(3)
A 		62
avr 20.4
(-3) 		23.7
(-2.4) 		42.8
(1) 		54.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 52.3
(-2)
A 		4.8
(-3)
A 		47.6
(-2.1)
P 		64.2
(-1.8)
P 		231.5
(1.7)
P 		295.2
(3)
P 		290
B 20.5
(-3)
A 		20.6
(-3)
A 		41.6
(-2.8)
A 		68.5
(-2.4)
P 		219.1
(-0.7)
P 		540.5
(3)
P 		520
C 8.2
(-3)
A 		16.8
(-2.9)
A 		63.8
(-2.4)
A 		55.2
(-2.5)
A 		194.5
(-0.8)
P 		523
(3)
P 		515
avr 27
(-2.8) 		14.1
(-3) 		51
(-2.5) 		62.6
(-2.3) 		215
(-0.3) 		452.9
(3) 		439
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.4
(-2.5)
A 		0.4
(-3)
A 		11.9
(3)
A 		8.2
(1.1)
A 		12
B 5.8
(-3)
A 		13.3
(3)
A 		10.3
(0.6)
P 		6.2
(-2.7)
A 		8
C 13
(2.7)
A 		4.4
(-3)
A 		13.4
(3)
P 		13.1
(2.8)
A 		9
avr 6.7
(-2.3) 		6
(-3) 		11.9
(3) 		9.2
(0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 9.6
(-2.3)
A 		1.7
(-3)
A 		10.4
(-2.3)
P 		16.3
(-1.8)
P 		69.8
(2.8)
P 		71.9
(3)
P 		70
B 7.1
(-3)
A 		6.8
(-3)
A 		10.1
(-2.9)
A 		18.2
(-2.6)
P 		89
(-0.5)
P 		201.5
(3)
P 		195
C 3.1
(-3)
A 		5.1
(-2.9)
A 		16.2
(-2.5)
A 		11.1
(-2.7)
A 		62.9
(-0.9)
P 		175.1
(3)
P 		172
avr 6.6
(-2.9) 		4.5
(-3) 		12.2
(-2.7) 		15.2
(-2.6) 		73.9
(-0.1) 		149.5
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175014_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20251
Sequence Type Exemplar sequence
Representative Public ID CEK116F3R NCBI
Target Description CEK116F3R_rc /REP_DB=TREMBL Accession /GB=D73278 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T23D8.7 ENSEMBL cdna:known chromosome:CEL140:I:9997923:10002081:1 gene:T23D8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036761 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10001663-10002002(+) 100.0 100.0
Public Domain and Genome References
Ensembl T23D8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03400 Hypothetical protein T23D8.7 [Caenorhabditis elegans] ref|NP_492643.1| T23D8.7 [Caenorhabditis elegans] 0.0
blast CAE60213 Hypothetical protein CBG03777 [Caenorhabditis briggsae] 0.0
blast CAE56575 Hypothetical protein CBG24316 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.9E-55
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 9.2E-88
Sequence
Target Sequence 
>C. ELEGANS:175014_AT
aacttactcgtcatttacatcatactcacccgaaatgcgggtcttttaaaaagtcattta
tctatttattttctcatttttcacactagtttacagatattcaatatcccatttttctaa
tagtcaatccacgatgtcgttcttattgttatattttgttgttacagtccaccttttcat
agatcttgttctcaattatacggttccggacaaatacttgttactttttgttgttgtcat
acatttttgttacaattttccattttttgttgttttctattttcgtgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTACTCGTCATTTACATCATAC 449 139 13 Antisense
TACATCATACTCACCCGAAATGCGG 237 643 28 Antisense
TTCTCATTTTTCACACTAGTTTACA 240 691 83 Antisense
GATATTCAATATCCCATTTTTCTAA 123 427 108 Antisense
TTTCTAATAGTCAATCCACGATGTC 103 671 126 Antisense
CCACGATGTCGTTCTTATTGTTATA 65 275 141 Antisense
TATTTTGTTGTTACAGTCCACCTTT 320 663 164 Antisense
GTCCACCTTTTCATAGATCTTGTTC 599 477 179 Antisense
TGTTCTCAATTATACGGTTCCGGAC 556 441 199 Antisense
GTTGTTGTCATACATTTTTGTTACA 28 439 242 Antisense
TTTGTTGTTTTCTATTTTCGTGCCA 410 665 278 Antisense
Sequence Source Affymetrix Proprietary Database