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[175012_at]

Description CEK020BXR_rc /REP_DB=TREMBL Accession /GB=D32692 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20b10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 38      4grp_highest_8_8 > 36      4grp_high_8_8 > 08      6grp_highest_nonorm > 70      6grp_total > 18      4grp_total > 15      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 348.3
(3)
P 		154.4
(-3)
P 		326
(2.3)
P 		296.2
(1.4)
P 		194
B 326.8
(3)
P 		230.4
(-1)
P 		183.1
(-3)
P 		315.4
(2.5)
P 		144
C 341.2
(3)
P 		232.2
(-3)
P 		285.1
(-0.1)
P 		258.7
(-1.5)
P 		109
avr 338.8
(3) 		205.7
(-3) 		264.7
(-0.3) 		290.1
(0.8) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 426.7
(3)
P 		261.1
(-0.9)
P 		174.1
(-3)
P 		188.4
(-2.7)
P 		284.7
(-0.4)
P 		303.7
(0.1)
P 		253
B 378.8
(3)
P 		294.2
(-0)
P 		209.8
(-3)
P 		370.2
(2.7)
P 		266.7
(-1)
P 		262.9
(-1.1)
P 		169
C 305
(3)
P 		274.8
(1.8)
P 		247.7
(0.7)
P 		277.5
(1.9)
P 		158
(-3)
P 		237.4
(0.2)
P 		147
avr 370.2
(3) 		276.7
(-0.5) 		210.5
(-3) 		278.7
(-0.4) 		236.5
(-2) 		268
(-0.8) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 126.8
(3)
P 		33.5
(-3)
P 		85.2
(0.3)
P 		43.4
(-2.4)
P 		93
B 104.2
(3)
P 		56.9
(-1.6)
P 		42.4
(-3)
P 		67.2
(-0.6)
P 		62
C 113
(3)
P 		66.8
(-1)
P 		99.4
(1.8)
P 		43.6
(-3)
P 		69
avr 114.7
(3) 		52.4
(-2.9) 		75.7
(-0.7) 		51.4
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 78.7
(1.5)
P 		92.9
(3)
P 		37.9
(-3)
P 		47.8
(-1.9)
P 		85.9
(2.2)
P 		73.9
(0.9)
P 		55
B 131.8
(3)
P 		97.9
(0.5)
P 		50.9
(-3)
P 		98.1
(0.5)
P 		108.4
(1.3)
P 		98
(0.5)
P 		81
C 113.1
(3)
P 		83.8
(0.2)
P 		63
(-1.8)
P 		55.8
(-2.5)
P 		51.1
(-3)
P 		79.5
(-0.3)
P 		62
avr 107.9
(3) 		91.5
(1.3) 		50.6
(-3) 		67.2
(-1.3) 		81.8
(0.3) 		83.8
(0.5) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175012_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22275
Sequence Type Exemplar sequence
Representative Public ID CEK020BXR NCBI
Target Description CEK020BXR_rc /REP_DB=TREMBL Accession /GB=D32692 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077952 NCBI Caenorhabditis elegans F28H6.6 (F28H6.6) mRNA, complete cds. 11/11 None
F28H6.6 ENSEMBL cdna:known chromosome:CEL140:X:14117008:14125794:-1 gene:F28H6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14117017-14117346(-) 77.51 100.0
Public Domain and Genome References
Gene Title
Ensembl F28H6.6
Entrez Gene 181521 Entrez gene
SwissProt Q9XX94 EMBL-EBI
WormBase CE37365 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20935 Hypothetical protein F28H6.6 [Caenorhabditis elegans] ref|NP_510353.2| F28H6.6 [Caenorhabditis elegans] 0.0
blast AAC68722 Hypothetical protein T10D4.6 [Caenorhabditis elegans] ref|NP_494452.2| T10D4.6 [Caenorhabditis elegans] 2.0E-9
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.20000004768372
Sequence
Target Sequence 
>C. ELEGANS:175012_AT
aattacgaaaacctcttctctccatcatcattgattcatttgtatttgctcattatgtat
ctcatctcacagtgttatcccaaaaaaaatgtttccttttctatgttttcggttatttgt
ggacttcccgatcttccaactaatcattaaattcctgtgccgaatttcgaatcgtttgat
tttagacaattttcagtgtattaccgttgttactttattttattatttttcattgttatt
tatttcgacttttacatctactttcttttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTACGAAAACCTCTTCTCTCCAT 666 175 25 Antisense
CTTCTCTCCATCATCATTGATTCAT 395 221 39 Antisense
ATTTGCTCATTATGTATCTCATCTC 621 17 68 Antisense
ATCTCATCTCACAGTGTTATCCCAA 548 31 83 Antisense
TTTTCTATGTTTTCGGTTATTTGTG 373 677 121 Antisense
GTTATTTGTGGACTTCCCGATCTTC 614 447 136 Antisense
TTCCCGATCTTCCAACTAATCATTA 704 697 149 Antisense
ACTAATCATTAAATTCCTGTGCCGA 2 101 163 Antisense
TCCTGTGCCGAATTTCGAATCGTTT 525 593 177 Antisense
TTCAGTGTATTACCGTTGTTACTTT 230 687 216 Antisense
GACTTTTACATCTACTTTCTTTTCT 57 373 271 Antisense
Sequence Source Affymetrix Proprietary Database