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[175011_at]

Description CEK102D1R_rc /REP_DB=TREMBL Accession /GB=D66542 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk102d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_highest_nonorm > 01      6grp_total > 27      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1532
1 2 3 4 range
A 3485.6
(3)
P 		2698.4
(-0.9)
P 		2262.9
(-3)
P 		2954
(0.4)
P 		1223
B 3782.9
(3)
P 		2580.3
(-1.7)
P 		2250.9
(-3)
P 		3088.3
(0.3)
P 		1532
C 3503
(3)
P 		2665.9
(-1.4)
P 		2349
(-3)
P 		2747.9
(-0.9)
P 		1154
avr 3590.5
(3) 		2648.2
(-1.3) 		2287.6
(-3) 		2930.1
(-0) 		1303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2058
1 2 3 4 5 6 range
A 3192.2
(3)
P 		2064.3
(-0.4)
P 		1388.5
(-2.4)
P 		1189.7
(-3)
P 		1683.9
(-1.5)
P 		1842.5
(-1)
P 		2003
B 2701.8
(3)
P 		1865.4
(-0.2)
P 		1134.3
(-3)
P 		1361.7
(-2.1)
P 		1476.4
(-1.7)
P 		1726.9
(-0.7)
P 		1568
C 2689.3
(3)
P 		1816.9
(-0.7)
P 		1573.2
(-1.8)
P 		1287.2
(-3)
P 		1468.8
(-2.2)
P 		1631.4
(-1.5)
P 		1402
avr 2861.1
(3) 		1915.5
(-0.6) 		1365.3
(-2.7) 		1279.5
(-3) 		1543
(-2) 		1733.6
(-1.3) 		1582
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 837
1 2 3 4 range
A 1269.1
(3)
P 		585.7
(-1.9)
P 		591.6
(-1.9)
P 		432.4
(-3)
P 		837
B 1206.3
(3)
P 		637.3
(-2)
P 		521.6
(-3)
P 		658.1
(-1.8)
P 		685
C 1159.6
(3)
P 		766.5
(-0.4)
P 		818.7
(0.1)
P 		463.3
(-3)
P 		696
avr 1211.7
(3) 		663.2
(-1.7) 		644
(-1.9) 		517.9
(-3) 		694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 738
1 2 3 4 5 6 range
A 588.5
(1)
P 		734.2
(3)
P 		302.4
(-3)
P 		301.7
(-3)
P 		508.1
(-0.1)
P 		448.6
(-1)
P 		433
B 940.1
(3)
P 		620.9
(0.1)
P 		275.4
(-3)
P 		360.7
(-2.2)
P 		599.8
(-0.1)
P 		644
(0.3)
P 		665
C 996.8
(3)
P 		554.4
(-0.6)
P 		400.4
(-1.8)
P 		258.9
(-3)
P 		475.3
(-1.2)
P 		546.1
(-0.7)
P 		738
avr 841.8
(3) 		636.5
(0.7) 		326.1
(-2.8) 		307.1
(-3) 		527.7
(-0.5) 		546.2
(-0.3) 		535
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21704
Sequence Type Exemplar sequence
Representative Public ID CEK102D1R NCBI
Target Description CEK102D1R_rc /REP_DB=TREMBL Accession /GB=D66542 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk102d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072715 NCBI Caenorhabditis elegans K07C11.7a (K07C11.7) mRNA, complete cds. 11/11 A 
K07C11.7a ENSEMBL cdna:known chromosome:CEL140:V:8210541:8213324:-1 gene:K07C11.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182393 3/11 Cross Hyb Matching Probes A 
SNAP00000021026 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021038 3/11 Cross Hyb Matching Probes None
K07C11.7b.1 3/11 Cross Hyb Matching Probes A 
K07C11.7b.2 3/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179200 2 1 NM_072715 175011_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8210551-8211009(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07C11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96177 Hypothetical protein K07C11.7a [Caenorhabditis elegans] ref|NP_505116.1| K07C11.7a [Caenorhabditis elegans] sp|Q21268|YMSO_CAEEL Hypothetical UPF0046 protein K07C11.7 in chromosome V 1.0E-174
blast AAO21380 Hypothetical protein K07C11.7b [Caenorhabditis elegans] ref|NP_872193.1| K07C11.7b [Caenorhabditis elegans] 1.0E-162
blast A89124 probable phosphoesterase (EC 3.1.-.-) K07C11.7 [similarity] - Caenorhabditis elegans 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 9.7E-18
Sequence
Target Sequence 
>C. ELEGANS:175011_AT
atttatcaacgctgcccaatgcaacaaaggaaaccaaattcaaactcgcccaatcgtctt
ctacattcctaaaaagaccttatcatagccttttcccagttttttgaagatcattaatct
gaaaatattcttacatcaatttcaaatttagacttctctaatgtgatttcagttcctaaa
ttctttgctatgtcgtacagtatgccattatgtcccttacgttttcgtttttaccatctc
tcaacggctttactcatttctcttctttcccatctttacacctttaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTATCAACGCTGCCCAATGCAAC 702 13 63 Antisense
AACGCTGCCCAATGCAACAAAGGAA 570 143 70 Antisense
CAATCGTCTTCTACATTCCTAAAAA 237 181 113 Antisense
TCATAGCCTTTTCCCAGTTTTTTGA 246 615 145 Antisense
TCAATTTCAAATTTAGACTTCTCTA 303 633 198 Antisense
GACTTCTCTAATGTGATTTCAGTTC 12 373 213 Antisense
TTCAGTTCCTAAATTCTTTGCTATG 133 689 230 Antisense
TTTGCTATGTCGTACAGTATGCCAT 56 669 246 Antisense
AGTATGCCATTATGTCCCTTACGTT 547 57 261 Antisense
TTTTTACCATCTCTCAACGGCTTTA 481 673 290 Antisense
TTTCCCATCTTTACACCTTTAATTG 651 669 328 Antisense
Sequence Source Affymetrix Proprietary Database