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[175010_s_at]

Description CEK131B4R_rc /REP_DB=TREMBL Accession /GB=D65102 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk131b4 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 5.9
(-2.7)
A 		2.6
(-3)
A 		44
(0.8)
A 		67.7
(3)
A 		65
B 8.9
(-3)
A 		23.8
(-1.3)
A 		58.5
(2.8)
A 		60.2
(3)
A 		51
C 2.4
(-3)
A 		38
(-0.2)
A 		22.1
(-1.5)
A 		80
(3)
A 		78
avr 5.7
(-3) 		21.5
(-1.5) 		41.5
(0.4) 		69.3
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 4.9
(-3)
A 		23.3
(-2.7)
A 		38.1
(-2.5)
A 		8.9
(-2.9)
A 		389
(3)
P 		370.8
(2.7)
P 		384
B 9.4
(-3)
A 		5.3
(-3)
A 		6.5
(-3)
A 		13.6
(-2.9)
A 		563
(3)
P 		400.9
(1.3)
P 		558
C 3.6
(-3)
A 		8.6
(-2.9)
A 		30.6
(-2.7)
A 		2.4
(-3)
A 		517.2
(3)
P 		401.4
(1.7)
P 		515
avr 6
(-3) 		12.4
(-2.9) 		25.1
(-2.8) 		8.3
(-3) 		489.7
(3) 		391
(1.8) 		484
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.2
(-2.1)
A 		0.6
(-3)
A 		11.5
(3)
A 		9.9
(2.1)
A 		11
B 2.8
(-3)
A 		5.9
(-1.3)
A 		13.5
(3)
A 		12.8
(2.6)
A 		11
C 0.8
(-3)
A 		10.9
(1.8)
A 		7.7
(0.3)
A 		13.5
(3)
A 		13
avr 1.9
(-3) 		5.8
(-0.7) 		10.9
(2.3) 		12.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 0.9
(-3)
A 		8.3
(-2.6)
A 		8.3
(-2.6)
A 		2.3
(-2.9)
A 		117.4
(3)
P 		90.3
(1.6)
P 		117
B 3.3
(-3)
A 		1.8
(-3)
A 		1.6
(-3)
A 		3.6
(-2.9)
A 		228.7
(3)
P 		149.5
(0.9)
P 		227
C 1.3
(-3)
A 		2.6
(-2.9)
A 		7.8
(-2.7)
A 		0.5
(-3)
A 		167.4
(3)
P 		134.4
(1.8)
P 		167
avr 1.8
(-3) 		4.2
(-2.9) 		5.9
(-2.9) 		2.1
(-3) 		171.2
(3) 		124.7
(1.4) 		169
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175010_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20591
Sequence Type Exemplar sequence
Representative Public ID CEK131B4R NCBI
Target Description CEK131B4R_rc /REP_DB=TREMBL Accession /GB=D65102 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk131b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064617 NCBI Caenorhabditis elegans F57C2.4 (F57C2.4) mRNA, complete cds. 11/11 None
F57C2.4 ENSEMBL cdna:known chromosome:CEL140:II:14525212:14525912:1 gene:F57C2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14525236-14525899(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57C2.4
Entrez Gene 175111 Entrez gene
SwissProt O45596 EMBL-EBI
WormBase CE16155 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05526 Hypothetical protein F57C2.4 [Caenorhabditis elegans] ref|NP_497018.1| F57C2.4 [Caenorhabditis elegans] 2.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497018.1 1 3-22
F57C2.4 1 3-22
Sequence
Target Sequence 
>C. ELEGANS:175010_S_AT
ttgtggcgctagctggcgggatagttgctcatgggatcaaaggtgaaccaattccttatt
caactgagacaatttggggaggcaaaatggttttcctgtgatatcgaacgatgtgcatct
gattgccgtaaaaaatgtgaggacctcgtcggcttttcgtgtacgaaaccgtggtggaat
cccaaatatagttgtgtctgcaagtgcccgctgaatctggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGGCGCTAGCTGGCGGGATAGT 669 707 13 Antisense
GCTGGCGGGATAGTTGCTCATGGGA 691 293 24 Antisense
GTTGCTCATGGGATCAAAGGTGAAC 25 439 36 Antisense
AACCAATTCCTTATTCAACTGAGAC 390 143 58 Antisense
ATGGTTTTCCTGTGATATCGAACGA 108 51 99 Antisense
AACGATGTGCATCTGATTGCCGTAA 604 141 119 Antisense
AAAAAATGTGAGGACCTCGTCGGCT 128 127 142 Antisense
TCGGCTTTTCGTGTACGAAACCGTG 67 1 161 Antisense
GAAACCGTGGTGGAATCCCAAATAT 124 359 177 Antisense
ATATAGTTGTGTCTGCAAGTGCCCG 215 13 198 Antisense
TGCAAGTGCCCGCTGAATCTGGAAG 556 575 211 Antisense
Sequence Source Affymetrix Proprietary Database