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[175009_at]

Description CEK110C3R_rc /REP_DB=TREMBL Accession /GB=D72851 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk110c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 41      6grp_total > 02      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 559
1 2 3 4 range
A 867.1
(3)
P 		602.7
(-0.4)
P 		603.5
(-0.4)
P 		401.4
(-3)
P 		466
B 960.1
(3)
P 		551.2
(-2.6)
P 		520.8
(-3)
P 		556.7
(-2.5)
P 		439
C 788.2
(3)
P 		611.3
(-0.2)
P 		720.4
(1.8)
P 		456.8
(-3)
P 		331
avr 871.8
(3) 		588.4
(-1.2) 		614.9
(-0.9) 		471.6
(-3) 		400

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 520
1 2 3 4 5 6 range
A 936.7
(3)
P 		837.9
(1.5)
P 		552.7
(-2.7)
P 		552.6
(-2.7)
P 		780.8
(0.7)
P 		533.1
(-3)
P 		404
B 986.2
(2.7)
P 		1016.1
(3)
P 		496.1
(-3)
P 		741.5
(-0.2)
P 		770.5
(0.2)
P 		542.8
(-2.5)
P 		520
C 876.9
(1.6)
P 		974.4
(3)
P 		634
(-1.8)
P 		654
(-1.5)
P 		739.1
(-0.3)
P 		547.2
(-3)
P 		427
avr 933.3
(2.9) 		942.8
(3) 		560.9
(-2.7) 		649.4
(-1.4) 		763.5
(0.3) 		541
(-3) 		402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 315.7
(3)
P 		130.8
(-1.3)
P 		157.8
(-0.7)
P 		58.8
(-3)
P 		257
B 306.2
(3)
P 		136.1
(-2.4)
P 		120.7
(-2.9)
P 		118.6
(-3)
P 		188
C 260.9
(3)
P 		175.7
(0.2)
P 		251.1
(2.7)
P 		77
(-3)
P 		184
avr 294.3
(3) 		147.5
(-1.2) 		176.5
(-0.4) 		84.8
(-3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 172.7
(-1.2)
P 		298
(3)
P 		120.4
(-3)
P 		140.1
(-2.3)
P 		235.6
(0.9)
P 		129.8
(-2.7)
P 		178
B 343.1
(3)
P 		338.2
(2.9)
P 		120.5
(-3)
P 		196.4
(-1)
P 		313
(2.2)
P 		202.4
(-0.8)
P 		223
C 325
(3)
P 		297.3
(2.1)
P 		161.4
(-2.1)
P 		131.5
(-3)
P 		239.2
(0.3)
P 		183.2
(-1.4)
P 		194
avr 280.3
(2) 		311.2
(3) 		134.1
(-3) 		156
(-2.3) 		262.6
(1.4) 		171.8
(-1.7) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22430
Sequence Type Exemplar sequence
Representative Public ID CEK110C3R NCBI
Target Description CEK110C3R_rc /REP_DB=TREMBL Accession /GB=D72851 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk110c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C14A11.3b ENSEMBL cdna:known chromosome:CEL140:X:2785594:2799224:1 gene:C14A11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2798898-2799214(+) 100.0 100.0
Public Domain and Genome References
Ensembl C14A11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52871 Temporarily assigned gene name protein 150, isoform b [Caenorhabditis elegans] ref|NP_741736.1| Temporarily Assigned Gene name family member (tag-150) [Caenorhabditis elegans] 0.0
blast AAB52870 Temporarily assigned gene name protein 150, isoform a [Caenorhabditis elegans] ref|NP_741737.1| Temporarily Assigned Gene name family member (tag-150) [Caenorhabditis elegans] 0.0
blast CAE58834 Hypothetical protein CBG02046 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001849 EMBL-EBI Pleckstrin-like 5.1E-8
Pfam IPR000219 EMBL-EBI DH domain 1.6E-15
Sequence
Target Sequence 
>C. ELEGANS:175009_AT
ccctctcctatggtttgcgggtatcaactatcactagataggcgttcttcttcttttttt
ttaaatgtaacggtaacactttgttaactaaaatagtgacagtgtgctcattatctccca
ctctttgtttttactgtctagattgtttatgtcgcctcgttttttttccttccttccccc
cggttatcagccggtctgtgaatctgtacgagttttttttttcgtagcttactaccagtt
ttctccctccaccgtcattcaatgagtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCTCCTATGGTTTGCGGGTATC 625 255 25 Antisense
GGTTTGCGGGTATCAACTATCACTA 565 505 36 Antisense
ACTAGATAGGCGTTCTTCTTCTTTT 353 101 57 Antisense
TGACAGTGTGCTCATTATCTCCCAC 686 571 121 Antisense
TCCCACTCTTTGTTTTTACTGTCTA 558 597 140 Antisense
CTGTCTAGATTGTTTATGTCGCCTC 368 237 158 Antisense
AGATTGTTTATGTCGCCTCGTTTTT 629 65 164 Antisense
CCCCGGTTATCAGCCGGTCTGTGAA 414 255 202 Antisense
GCCGGTCTGTGAATCTGTACGAGTT 85 283 214 Antisense
TCGTAGCTTACTACCAGTTTTCTCC 228 605 246 Antisense
CCCTCCACCGTCATTCAATGAGTAT 160 261 269 Antisense
Sequence Source Affymetrix Proprietary Database