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[175007_at]

Description CEK130D9R_rc /REP_DB=TREMBL Accession /GB=D65061 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk130d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 40      6grp_total > 28      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 642.7
(3)
P 		596
(1.3)
P 		476.6
(-2.9)
P 		474
(-3)
P 		169
B 632.6
(3)
P 		615.9
(2.1)
P 		525.6
(-3)
P 		628.7
(2.8)
P 		107
C 558.8
(1.6)
P 		581.3
(3)
P 		492.8
(-2.7)
P 		487.8
(-3)
P 		93
avr 611.4
(3) 		597.7
(2.3) 		498.3
(-3) 		530.2
(-1.3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 967
1 2 3 4 5 6 range
A 1288.7
(3)
P 		800.5
(-0)
P 		322
(-3)
P 		463.8
(-2.1)
P 		639.1
(-1)
P 		724.9
(-0.5)
P 		967
B 720.7
(3)
P 		595.5
(0.7)
P 		399.7
(-3)
P 		571.4
(0.2)
P 		447
(-2.1)
P 		581.1
(0.4)
P 		321
C 940.2
(3)
P 		468.7
(-2.5)
P 		516.1
(-1.9)
P 		423.2
(-3)
P 		663.1
(-0.2)
P 		439.1
(-2.8)
P 		517
avr 983.2
(3) 		621.6
(-0.8) 		412.6
(-3) 		486.1
(-2.2) 		583.1
(-1.2) 		581.7
(-1.2) 		571
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 234
(3)
P 		129.4
(-0.8)
P 		124.6
(-1)
P 		69.4
(-3)
P 		165
B 201.7
(3)
P 		152.1
(-0.7)
P 		121.8
(-3)
P 		134
(-2.1)
P 		80
C 185
(3)
P 		167.1
(2)
P 		171.7
(2.2)
P 		82.3
(-3)
P 		103
avr 206.9
(3) 		149.5
(-0.1) 		139.4
(-0.6) 		95.2
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 237.6
(1.7)
P 		284.7
(3)
P 		70.1
(-3)
P 		117.6
(-1.7)
P 		192.8
(0.4)
P 		176.5
(-0)
P 		215
B 250.8
(3)
P 		198.2
(0.9)
P 		97.1
(-3)
P 		151.4
(-0.9)
P 		181.6
(0.3)
P 		216.7
(1.7)
P 		154
C 348.5
(3)
P 		143
(-1.7)
P 		131.4
(-1.9)
P 		85.1
(-3)
P 		214.6
(-0.1)
P 		147
(-1.6)
P 		263
avr 279
(3) 		208.6
(0.6) 		99.5
(-3) 		118
(-2.4) 		196.3
(0.2) 		180.1
(-0.3) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22302
Sequence Type Exemplar sequence
Representative Public ID CEK130D9R NCBI
Target Description CEK130D9R_rc /REP_DB=TREMBL Accession /GB=D65061 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk130d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078234 NCBI Caenorhabditis elegans F09C8.2 (F09C8.2) mRNA, complete cds. 11/11 None
F09C8.2.2 ENSEMBL cdna:known chromosome:CEL140:X:16140428:16146938:-1 gene:F09C8.2 11/11 None
F09C8.2.1 ENSEMBL cdna:known chromosome:CEL140:X:16140428:16146937:-1 gene:F09C8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16140449-16140775(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C8.2
Entrez Gene 181690 Entrez gene
SwissProt O01299 EMBL-EBI
WormBase CE03178 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92220 Hypothetical protein F09C8.2 [Caenorhabditis elegans] ref|NP_510635.2| F09C8.2 [Caenorhabditis elegans] 0.0
blast CAE69992 Hypothetical protein CBG16396 [Caenorhabditis briggsae] 0.0
blast XP_787059 PREDICTED: similar to growth inhibition and differentiation related protein 86, partial [Strongylocentrotus purpuratus] 4.0E-10
Sequence
Target Sequence 
>C. ELEGANS:175007_AT
tcagtcaaaatctctcctttgtcccccacaaacatttaacactattttatagtatgttcg
aatttcccctcttgaaatgtcaagtgttgaaattgttcgcactttgaatgtcccaacatt
tcccagcacattttcttttattgttttcatgggctttcgatttggtcaatattttcaaaa
tattcggccttcccccttgcattgtttggaaaatttctaaactcaatgcaccgtttattg
gaatttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTCAAAATCTCTCCTTTGTCCC 296 623 57 Antisense
TTGTCCCCCACAAACATTTAACACT 438 669 75 Antisense
ATAGTATGTTCGAATTTCCCCTCTT 397 21 105 Antisense
GAATTTCCCCTCTTGAAATGTCAAG 377 325 116 Antisense
AATTGTTCGCACTTTGAATGTCCCA 296 179 147 Antisense
TTGAATGTCCCAACATTTCCCAGCA 185 705 160 Antisense
ATTTCCCAGCACATTTTCTTTTATT 417 17 174 Antisense
GTTTTCATGGGCTTTCGATTTGGTC 686 447 199 Antisense
TTCCCCCTTGCATTGTTTGGAAAAT 150 699 246 Antisense
AAAATTTCTAAACTCAATGCACCGT 618 133 266 Antisense
AATGCACCGTTTATTGGAATTTATT 421 165 281 Antisense
Sequence Source Affymetrix Proprietary Database