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[175006_at]

Description CEK134F2R_rc /REP_DB=TREMBL Accession /GB=D65319 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 05      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 50      6grp_total > 14      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 533.7
(2.8)
P 		401
(0.7)
P 		544.7
(3)
P 		173.7
(-3)
P 		371
B 432.9
(2)
P 		484.5
(3)
P 		386.8
(1.1)
P 		175.6
(-3)
P 		309
C 542.8
(2)
P 		495.7
(1.4)
P 		614.5
(3)
P 		170.5
(-3)
P 		444
avr 503.1
(2.8) 		460.4
(2) 		515.3
(3) 		173.3
(-3) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 683
1 2 3 4 5 6 range
A 607.6
(3)
P 		595.2
(2.8)
P 		469.8
(0.7)
P 		455.7
(0.5)
P 		375.7
(-0.8)
P 		241.3
(-3)
P 		366
B 924.1
(3)
P 		665.3
(0.5)
P 		436
(-1.7)
P 		608.1
(-0.1)
P 		375.5
(-2.3)
P 		302.5
(-3)
P 		622
C 776.7
(3)
P 		584.1
(0.8)
P 		545.2
(0.3)
P 		439.6
(-0.9)
P 		359.6
(-1.8)
P 		258.9
(-3)
P 		518
avr 769.5
(3) 		614.9
(1.2) 		483.7
(-0.4) 		501.1
(-0.2) 		370.3
(-1.8) 		267.6
(-3) 		502
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 194.3
(3)
P 		87.1
(-0.8)
P 		142.4
(1.2)
P 		25.4
(-3)
P 		169
B 138.1
(3)
P 		119.7
(1.9)
P 		89.6
(0.1)
P 		37.4
(-3)
P 		101
C 179.7
(1.9)
P 		142.5
(0.7)
P 		214.2
(3)
P 		28.8
(-3)
P 		185
avr 170.7
(3) 		116.4
(0.7) 		148.7
(2.1) 		30.5
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 112
(-0.9)
P 		211.7
(3)
P 		102.3
(-1.3)
P 		115.6
(-0.8)
P 		113.4
(-0.9)
P 		58.7
(-3)
P 		153
B 321.5
(3)
P 		221.5
(0.2)
P 		105.9
(-3)
P 		161.1
(-1.5)
P 		152.6
(-1.7)
P 		112.8
(-2.8)
P 		216
C 287.9
(3)
P 		178.2
(-0.3)
P 		138.8
(-1.4)
P 		88.4
(-2.9)
P 		116.3
(-2.1)
P 		86.7
(-3)
P 		201
avr 240.5
(3) 		203.8
(1.6) 		115.7
(-1.8) 		121.7
(-1.6) 		127.4
(-1.4) 		86.1
(-3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20472
Sequence Type Exemplar sequence
Representative Public ID CEK134F2R NCBI
Target Description CEK134F2R_rc /REP_DB=TREMBL Accession /GB=D65319 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026816(11), NM_001026817(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026816 NCBI Caenorhabditis elegans Epithelial Fusion Failure family member (eff-1) (eff-1) mRNA, complete cds. 11/11 None
NM_001026817 NCBI Caenorhabditis elegans Epithelial Fusion Failure family member (eff-1) (eff-1) mRNA, complete cds. 11/11 None
C26D10.5a ENSEMBL cdna:known chromosome:CEL140:II:8346613:8350472:1 gene:C26D10.5 11/11 A 
C26D10.5b ENSEMBL cdna:known chromosome:CEL140:II:8346617:8350472:1 gene:C26D10.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174334 4 2 NM_001026816 175006_at (11), 181806_at (11), 181847_s_at (11)
NM_001026817 175006_at (11), 181847_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8350114-8350436(+) 100.0 100.0
Public Domain and Genome References
Ensembl C26D10.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91123 Hypothetical protein C26D10.5a [Caenorhabditis elegans] ref|NP_001021987.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84282.1| EFF-1A precursor [Caenorhabditis elegans] 0.0
blast CAD36481 Hypothetical protein C26D10.5b [Caenorhabditis elegans] ref|NP_001021988.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84283.1| EFF-1B precursor [Caenorhabditis elegans] 0.0
blast CAE57697 Hypothetical protein CBG00700 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021987.1 1 562-584
NP_001021988.1 1 562-584
C26D10.5a 1 562-584
C26D10.5b 1 562-584
Sequence
Target Sequence 
>C. ELEGANS:175006_AT
tcatctgatcatgcatttcttcatattcatcttgtcacattgctaataatctcgttcaat
ttatgggtacacacagtgctgattcgacgacgcgtattttttctttttcccaattctcaa
ttttcagttttgaattttgaatatttccatttaataccataacgggtatctgaatttatt
tctaaagccgattgtaattttgtgataccatttgcctatttctttcctattcttcttata
ccaatgtctactgttcccctctgtgcctttcaatgtttccaacggtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCTGATCATGCATTTCTTCATA 169 621 15 Antisense
TTCATATTCATCTTGTCACATTGCT 498 689 34 Antisense
GTCACATTGCTAATAATCTCGTTCA 443 465 48 Antisense
CTCGTTCAATTTATGGGTACACACA 680 231 65 Antisense
CACACAGTGCTGATTCGACGACGCG 649 193 84 Antisense
GATTCGACGACGCGTATTTTTTCTT 115 433 95 Antisense
TGATACCATTTGCCTATTTCTTTCC 7 565 217 Antisense
TTCTTTCCTATTCTTCTTATACCAA 382 689 234 Antisense
CTTATACCAATGTCTACTGTTCCCC 209 223 249 Antisense
CTCTGTGCCTTTCAATGTTTCCAAC 350 231 273 Antisense
GCCTTTCAATGTTTCCAACGGTGCT 222 281 279 Antisense
Sequence Source Affymetrix Proprietary Database