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[175005_at]

Description CEK065BXR_rc /REP_DB=TREMBL Accession /GB=D65623 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65b10 : 3prime end, single read.
Cluster 6grp_total > 81      4grp_total > 43      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 4.4
(1.1)
A 		5.4
(3)
A 		5
(2.2)
A 		2.3
(-3)
A 		3
B 5
(-2.6)
A 		28.3
(3)
A 		5.5
(-2.5)
A 		3.3
(-3)
A 		25
C 2.2
(-3)
A 		4.7
(-0.2)
A 		4.1
(-0.8)
A 		7.5
(3)
A 		5
avr 3.9
(-3) 		12.8
(3) 		4.9
(-2.3) 		4.4
(-2.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4
(-0.4)
A 		3
(-1.5)
A 		1.6
(-3)
A 		7.2
(3)
A 		5.1
(0.8)
A 		2.7
(-1.8)
A 		6
B 3.3
(-1.4)
A 		3.7
(-0.9)
A 		4
(-0.5)
A 		6.6
(3)
A 		2.1
(-3)
A 		2.4
(-2.6)
A 		5
C 3.7
(-2.2)
A 		7.5
(3)
A 		5.4
(0.1)
A 		6.3
(1.4)
A 		5.2
(-0.1)
A 		3.1
(-3)
A 		4
avr 3.7
(-1.5) 		4.7
(0) 		3.7
(-1.5) 		6.7
(3) 		4.1
(-0.9) 		2.7
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.6
(3)
A 		1.2
(1.2)
A 		1.3
(1.6)
A 		0.3
(-3)
A 		1
B 1.6
(-2.1)
A 		7
(3)
A 		1.3
(-2.4)
A 		0.7
(-3)
A 		6
C 0.7
(-3)
A 		1.3
(2.1)
A 		1.4
(3)
A 		1.3
(2.1)
A 		1
avr 1.3
(-1.8) 		3.2
(3) 		1.3
(-1.8) 		0.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.7
(-1.4)
A 		1
(-0.2)
A 		0.3
(-3)
A 		1.8
(3)
A 		1.5
(1.8)
A 		0.7
(-1.4)
A 		2
B 1.2
(-0.6)
A 		1.2
(-0.6)
A 		1
(-1.8)
A 		1.8
(3)
A 		0.8
(-3)
A 		0.9
(-2.4)
A 		1
C 1.4
(-1.2)
A 		2.3
(3)
A 		1.4
(-1.2)
A 		1.3
(-1.6)
A 		1.7
(0.2)
A 		1
(-3)
A 		1
avr 1.1
(-1.3) 		1.5
(2.1) 		0.9
(-3) 		1.6
(3) 		1.3
(0.4) 		0.9
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20548
Sequence Type Exemplar sequence
Representative Public ID CEK065BXR NCBI
Target Description CEK065BXR_rc /REP_DB=TREMBL Accession /GB=D65623 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182123 NCBI Caenorhabditis elegans protein KINase family member (kin-6) (kin-6) mRNA, complete cds. 11/11 None
SNAP00000019227 ENSEMBL cdna:SNAP chromosome:CEL140:II:11639895:11641641:1 11/11 None
GENEFINDER00000019234 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11640359:11642264:1 11/11 None
ZK20.2 ENSEMBL cdna:known chromosome:CEL140:II:11640359:11641683:1 gene:ZK20.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11641305-11641670(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol kin-6
Ensembl ZK20.2
Entrez Gene 174783 Entrez gene
SwissProt Q8I4A8 EMBL-EBI
WormBase CE32773 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD57718 Hypothetical protein ZK20.2 [Caenorhabditis elegans] ref|NP_871923.1| protein KINase family member (kin-6) [Caenorhabditis elegans] 1.0E-173
blast CAD57718 Hypothetical protein ZK20.2 [Caenorhabditis elegans] ref|NP_871923.1| protein KINase family member (kin-6) [Caenorhabditis elegans] 1.0E-126
blast CAE60278 Hypothetical protein CBG03859 [Caenorhabditis briggsae] 1.0E-100
blast CAD57718 Hypothetical protein ZK20.2 [Caenorhabditis elegans] ref|NP_871923.1| protein KINase family member (kin-6) [Caenorhabditis elegans] 9.0E-75
blast CAE60278 Hypothetical protein CBG03859 [Caenorhabditis briggsae] 3.0E-70
blast AAB37087 Protein kinase protein 31 [Caenorhabditis elegans] ref|NP_498912.3| protein KINase family member (kin-31) [Caenorhabditis elegans] sp|P34265|KIN31_CAEEL Probable tyrosine-protein kinase kin-31 3.0E-69
blast NP_501309 protein KINase family member (kin-26) [Caenorhabditis elegans] gb|AAA82302.1| Protein kinase protein 26 [Caenorhabditis elegans] 1.0E-52
blast G88535 protein B0523.1 [imported] - Caenorhabditis elegans 4.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.059
Pfam IPR000719 EMBL-EBI Protein kinase 6.8E-16
Pfam IPR000719 EMBL-EBI Protein kinase 3.6E-32
Pfam IPR000719 EMBL-EBI Protein kinase 3.6E-32
Sequence
Target Sequence 
>C. ELEGANS:175005_AT
cactccagccatatccagggatgacgatcgccgaagttacacaaaaggttgcccgaggat
accgcatggatcttccagaggaaatgatggaaatggtgggtatcaaatctctgattggaa
gatgctggcgagagaacgagcgagagcgtccacatatggctgaaatcgcctcagaaatgc
aacgtttgactggcattccgagacctgattttgatggaatggaggctcagctgaaacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCCAGCCATATCCAGGGATGAC 498 197 14 Antisense
GGGATGACGATCGCCGAAGTTACAC 64 497 31 Antisense
AAAAGGTTGCCCGAGGATACCGCAT 118 129 56 Antisense
GAGGATACCGCATGGATCTTCCAGA 519 403 68 Antisense
GAAATGGTGGGTATCAAATCTCTGA 94 361 103 Antisense
GAGAGAACGAGCGAGAGCGTCCACA 664 393 143 Antisense
GAGCGTCCACATATGGCTGAAATCG 261 385 157 Antisense
AAATCGCCTCAGAAATGCAACGTTT 697 117 176 Antisense
GCAACGTTTGACTGGCATTCCGAGA 223 313 192 Antisense
CTGGCATTCCGAGACCTGATTTTGA 639 239 203 Antisense
GGAATGGAGGCTCAGCTGAAACGAG 653 531 229 Antisense
Sequence Source Affymetrix Proprietary Database