[Home] | [Total List]

[175004_at]

Description CEK027FXR_rc /REP_DB=TREMBL Accession /GB=D33203 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 75      6grp_total > 47      4grp_total > 06      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1222
1 2 3 4 range
A 1691.1
(3)
P 		877.8
(-3)
P 		1213.1
(-0.5)
P 		1312.1
(0.2)
P 		813
B 1083.3
(-1.9)
P 		938.9
(-2.6)
P 		864.7
(-3)
P 		2086.4
(3)
P 		1222
C 1514.8
(3)
P 		1012.7
(-3)
P 		1297.5
(0.4)
P 		1341.3
(0.9)
P 		502
avr 1429.7
(1.6) 		943.1
(-3) 		1125.1
(-1.3) 		1579.9
(3) 		637

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 791.8
(0.6)
P 		850.8
(1.7)
P 		703.6
(-0.9)
P 		588.1
(-3)
P 		924.3
(3)
P 		834.9
(1.4)
P 		336
B 928.2
(1.9)
P 		1016.3
(3)
P 		514.2
(-3)
P 		759.8
(-0.1)
P 		716.2
(-0.6)
P 		1019.1
(3)
P 		505
C 884.3
(-0.6)
P 		950.9
(1.2)
P 		907.9
(0)
P 		1019.8
(3)
P 		794.3
(-3)
P 		983.2
(2)
P 		226
avr 868.1
(1) 		939.3
(2.8) 		708.6
(-3) 		789.2
(-1) 		811.6
(-0.4) 		945.7
(3) 		237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 615.7
(3)
P 		190.5
(-3)
P 		317.1
(-1.2)
P 		192.1
(-3)
P 		425
B 345.5
(0.6)
P 		231.9
(-2.2)
P 		200.4
(-3)
P 		444.6
(3)
P 		244
C 501.4
(3)
P 		291.2
(-1.6)
P 		452.2
(1.9)
P 		226.2
(-3)
P 		275
avr 487.5
(3) 		237.9
(-3) 		323.2
(-0.9) 		287.6
(-1.8) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 146
(-3)
P 		302.6
(3)
P 		153.2
(-2.7)
P 		149.1
(-2.9)
P 		278.9
(2.1)
P 		203.3
(-0.8)
P 		157
B 323
(1.7)
P 		338.3
(2)
P 		124.9
(-3)
P 		201.3
(-1.2)
P 		291
(0.9)
P 		380
(3)
P 		255
C 327.8
(2.9)
P 		290.2
(1.1)
P 		231.1
(-1.7)
P 		205.1
(-3)
P 		257
(-0.5)
P 		329.1
(3)
P 		124
avr 265.6
(1.1) 		310.4
(3) 		169.7
(-3) 		185.2
(-2.3) 		275.6
(1.5) 		304.1
(2.7) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20900
Sequence Type Exemplar sequence
Representative Public ID CEK027FXR NCBI
Target Description CEK027FXR_rc /REP_DB=TREMBL Accession /GB=D33203 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066230(11), NM_001027602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066230 NCBI Caenorhabditis elegans Myc and Mondo-Like family member (mml-1) (mml-1) mRNA, complete cds. 11/11 A 
NM_001027602 NCBI Caenorhabditis elegans Myc and Mondo-Like family member (mml-1) (mml-1) mRNA, complete cds. 11/11 None
T20B12.6a ENSEMBL cdna:known chromosome:CEL140:III:7370051:7374645:-1 gene:T20B12.6 11/11 A 
T20B12.6b ENSEMBL cdna:known chromosome:CEL140:III:7370057:7374645:-1 gene:T20B12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7370077-7370495(-) 98.67 98.67
Public Domain and Genome References
Ensembl T20B12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19059 Myc and mondo-like protein 1, isoform a [Caenorhabditis elegans] ref|NP_498631.2| Myc and Mondo-Like family member (mml-1) [Caenorhabditis elegans] gb|AAK20949.1| Mlx interactor [Caenorhabditis elegans] sp|P41846|WBS14_CAEEL WBSCR14 protein homolog (Mlx interactor) 0.0
blast AAN65289 Myc and mondo-like protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022773.1| Myc and Mondo-Like family member (mml-1) [Caenorhabditis elegans] 0.0
blast AAL50027 basic helix-loop-helix leucine zipper WBSCR14-like protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 3.6E-9
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 1.7E-12
Sequence
Target Sequence 
>C. ELEGANS:175004_AT
aaatccattttgaactgctcattatagaatcatgtttattgtttttaacatacgattttt
ctgcgtagatttgtttagattttttgaaatatctcagtccctttcatgttgccataactt
tttatccaggattctaatcatttagattcaatcacgggtttttttcccactagcagccac
cacagaaacagccctcgtttatatgttcgggttacctttatattacagtttgctcaattt
ctcatgtattaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCCATTTTGAACTGCTCATTAT 246 119 99 Antisense
TGTTTTTAACATACGATTTTTCTGC 379 561 138 Antisense
GATTTTTCTGCGTAGATTTGTTTAG 663 427 152 Antisense
GAAATATCTCAGTCCCTTTCATGTT 413 363 184 Antisense
TCCCTTTCATGTTGCCATAACTTTT 187 597 196 Antisense
GCCATAACTTTTTATCCAGGATTCT 429 281 209 Antisense
TCACGGGTTTTTTTCCCACTAGCAG 224 583 250 Antisense
CACTAGCAGCCACCACAGAAACAGC 653 197 266 Antisense
AACAGCCCTCGTTTATATGTTCGGG 664 135 285 Antisense
GTTACCTTTATATTACAGTTTGCTC 61 447 309 Antisense
TTTGCTCAATTTCTCATGTATTAAA 590 667 327 Antisense
Sequence Source Affymetrix Proprietary Database