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[175002_at]

Description CEK080GXR_rc /REP_DB=TREMBL Accession /GB=D71730 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 47      6grp_total > 38      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6058
1 2 3 4 range
A 3941.4
(-1.8)
P 		3990.4
(-1.7)
P 		2796.3
(-3)
P 		8522.3
(3)
P 		5726
B 4597.1
(-0.5)
P 		3205.4
(-2.1)
P 		2464.8
(-3)
P 		7655.1
(3)
P 		5190
C 3516.5
(-2.1)
P 		3134.4
(-2.5)
P 		2708.3
(-3)
P 		8031
(3)
P 		5323
avr 4018.3
(-1.5) 		3443.4
(-2.1) 		2656.5
(-3) 		8069.5
(3) 		5413

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3194
1 2 3 4 5 6 range
A 5080.9
(3)
P 		2889.5
(-1.2)
P 		1948.7
(-3)
P 		2647.5
(-1.7)
P 		3006.4
(-1)
P 		3841.8
(0.6)
P 		3132
B 4025.6
(3)
P 		2738
(-0.6)
P 		1886.7
(-3)
P 		2928.4
(-0.1)
P 		2844.6
(-0.3)
P 		3398.1
(1.2)
P 		2139
C 4123
(3)
P 		2509.9
(-2.5)
P 		2350.8
(-3)
P 		2625.3
(-2.1)
P 		3171.8
(-0.2)
P 		3131.4
(-0.4)
P 		1772
avr 4409.8
(3) 		2712.5
(-1.3) 		2062.1
(-3) 		2733.7
(-1.3) 		3007.6
(-0.6) 		3457.1
(0.6) 		2348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1060
1 2 3 4 range
A 1435.1
(3)
P 		866.2
(-1.8)
P 		731
(-3)
P 		1247.5
(1.4)
P 		704
B 1466
(2.1)
P 		791.7
(-1.8)
P 		571.2
(-3)
P 		1631.3
(3)
P 		1060
C 1164.1
(0.5)
P 		901.2
(-3)
P 		943.9
(-2.4)
P 		1354.1
(3)
P 		453
avr 1355.1
(2.5) 		853
(-2.1) 		748.7
(-3) 		1411
(3) 		662

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1104
1 2 3 4 5 6 range
A 936.6
(2.1)
P 		1027.6
(3)
P 		424.4
(-3)
P 		671.5
(-0.5)
P 		907.2
(1.8)
P 		935.4
(2.1)
P 		603
B 1400.7
(3)
P 		911.4
(-0.1)
P 		458.1
(-3)
P 		775.6
(-1)
P 		1155.7
(1.4)
P 		1267.1
(2.1)
P 		943
C 1528.2
(3)
P 		765.8
(-1.6)
P 		598.3
(-2.6)
P 		527.9
(-3)
P 		1026.3
(-0)
P 		1048.2
(0.1)
P 		1000
avr 1288.5
(3) 		901.6
(0.1) 		493.6
(-3) 		658.3
(-1.8) 		1029.7
(1) 		1083.6
(1.5) 		795
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20138
Sequence Type Exemplar sequence
Representative Public ID CEK080GXR NCBI
Target Description CEK080GXR_rc /REP_DB=TREMBL Accession /GB=D71730 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059604 NCBI Caenorhabditis elegans F22D6.2 (F22D6.2) mRNA, complete cds. 11/11 None
F22D6.2.1 ENSEMBL cdna:known chromosome:CEL140:I:7087728:7089654:-1 gene:F22D6.2 11/11 None
F22D6.2.2 ENSEMBL cdna:known chromosome:CEL140:I:7087791:7089652:-1 gene:F22D6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7087731-7088307(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22D6.2
Entrez Gene 172441 Entrez gene
SwissProt Q19723 EMBL-EBI
WormBase CE05683 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265150_AT zinc finger (AN1-like) family protein at
ATGENOME1:20562_AT zinc finger (AN1-like) family protein at
CANINE:1588474_AT similar to Zinc finger A20 domain containing protein 2 (Zinc finger protein 216) cfa
CANINE:1584729_AT similar to Zinc finger A20 domain containing protein 2 (Zinc finger protein 216) cfa
CANINE_2:CFA.10054.1.A1_S_AT similar to Zinc finger A20 domain containing protein 2 (Zinc finger protein 216) cfa
CANINE_2:CFA.10843.1.A1_AT similar to Zinc finger A20 domain containing protein 2 (Zinc finger protein 216) cfa
CANINE_2:CFAAFFX.3616.1.S1_S_AT similar to Zinc finger A20 domain containing protein 2 (Zinc finger protein 216) cfa
CHICKEN:GGA.11716.2.S1_AT zinc finger, A20 domain containing 2 gga
CHICKEN:GGAAFFX.12473.1.S1_AT zinc finger, A20 domain containing 2 gga
CHICKEN:GGAAFFX.12473.1.S1_S_AT zinc finger, A20 domain containing 2 gga
CHICKEN:GGAAFFX.24618.1.S1_AT zinc finger, A20 domain containing 2 gga
CHICKEN:GGAAFFX.24618.1.S1_S_AT zinc finger, A20 domain containing 2 gga
HG-U133_PLUS_2:217741_S_AT zinc finger, A20 domain containing 2 hs
HG-U133A_2:217741_S_AT zinc finger, A20 domain containing 2 hs
HG-U133A:217741_S_AT zinc finger, A20 domain containing 2 hs
HG-U133_PLUS_2:210275_S_AT zinc finger, A20 domain containing 2 hs
HG-U133A:210275_S_AT zinc finger, A20 domain containing 2 hs
HG-FOCUS:210275_S_AT zinc finger, A20 domain containing 2 hs
HG-U133A_2:210275_S_AT zinc finger, A20 domain containing 2 hs
HU35KSUBA:AA094999_AT zinc finger, A20 domain containing 2 hs
HU35KSUBA:RC_AA281380_AT zinc finger, A20 domain containing 2 hs
HU35KSUBB:RC_T65324_AT zinc finger, A20 domain containing 2 hs
HU35KSUBD:RC_AA233347_AT zinc finger, A20 domain containing 2 hs
U133_X3P:G3643810_3P_A_AT zinc finger, A20 domain containing 2 hs
U133_X3P:HS.3776.0.A1_3P_A_AT zinc finger, A20 domain containing 2 hs
U133_X3P:HS.321211.0.A1_3P_AT zinc finger, A20 domain containing 2 hs
HG-U95AV2:41542_AT zinc finger, A20 domain containing 2 hs
HG-U95E:71025_AT zinc finger, A20 domain containing 2 hs
HG-U133_PLUS_2:228317_AT Zinc finger, A20 domain containing 2 hs
HG-U133B:228317_AT Zinc finger, A20 domain containing 2 hs
HG-U133_PLUS_2:229368_S_AT Zinc finger, A20 domain containing 2 hs
HG-U133B:229368_S_AT Zinc finger, A20 domain containing 2 hs
HG-U95B:44141_AT Zinc finger, A20 domain containing 2 hs
HU35KSUBA:RC_AA463929_AT Zinc finger, A20 domain containing 2 hs
U133_X3P:HS.28701.0.A1_3P_AT Zinc finger, A20 domain containing 2 hs
U133_X3P:HS.3776.2.A1_3P_AT Zinc finger, A20 domain containing 2 hs
MOE430A:1416085_S_AT zinc finger, A20 domain containing 2 mm
MOUSE430A_2:1416085_S_AT zinc finger, A20 domain containing 2 mm
MOUSE430_2:1416085_S_AT zinc finger, A20 domain containing 2 mm
MOE430A:1416084_AT zinc finger, A20 domain containing 2 mm
MOUSE430_2:1416084_AT zinc finger, A20 domain containing 2 mm
MOUSE430A_2:1416084_AT zinc finger, A20 domain containing 2 mm
MOE430A:1416083_AT zinc finger, A20 domain containing 2 mm
MOUSE430_2:1416083_AT zinc finger, A20 domain containing 2 mm
MOUSE430A_2:1416083_AT zinc finger, A20 domain containing 2 mm
MOUSE430_2:1441106_AT zinc finger, A20 domain containing 2 mm
MOE430B:1441106_AT zinc finger, A20 domain containing 2 mm
MOUSE430_2:1453374_AT zinc finger, A20 domain containing 2 mm
MOE430B:1453374_AT zinc finger, A20 domain containing 2 mm
MU11KSUBA:AA510137_S_AT zinc finger, A20 domain containing 2 mm
MG-U74BV2:109020_AT zinc finger, A20 domain containing 2 mm
MG-U74BV2:116765_AT zinc finger, A20 domain containing 2 mm
MG-U74CV2:135734_AT zinc finger, A20 domain containing 2 mm
MG-U74AV2:160321_AT zinc finger, A20 domain containing 2 mm
MOE430B:1429657_AT zinc finger, A20 domain containing 2 mm
MOUSE430_2:1429657_AT zinc finger, A20 domain containing 2 mm
MOE430B:1453224_AT zinc finger, A20 domain containing 2 mm
MOUSE430_2:1453224_AT zinc finger, A20 domain containing 2 mm
MG-U74CV2:132792_R_AT Zinc finger, A20 domain containing 2 (Za20d2), mRNA mm
MU11KSUBA:AA111007_AT Zinc finger, A20 domain containing 2 (Za20d2), mRNA mm
MU19KSUBA:TC15227_AT Zinc finger, A20 domain containing 2 (Za20d2), mRNA mm
MU19KSUBA:TC18050_AT Zinc finger, A20 domain containing 2 (Za20d2), mRNA mm
MU19KSUBA:TC22535_AT Zinc finger, A20 domain containing 2 (Za20d2), mRNA mm
MU19KSUBC:TC36674_AT Zinc finger, A20 domain containing 2 (Za20d2), mRNA mm
RG-U34B:RC_AA943167_AT zinc finger protein 216 (predicted) rn
RG-U34B:RC_AA946391_AT zinc finger protein 216 (predicted) rn
RAE230A:1375130_AT zinc finger protein 216 (predicted) rn
RAT230_2:1375130_AT zinc finger protein 216 (predicted) rn
RAE230A:1388868_AT zinc finger protein 216 (predicted) rn
RAT230_2:1388868_AT zinc finger protein 216 (predicted) rn
RAE230A:1374102_AT Zinc finger protein 216 (predicted) rn
RAT230_2:1374102_AT Zinc finger protein 216 (predicted) rn
RG-U34C:RC_AI228168_AT Zinc finger protein 216 (predicted) rn
RG-U34C:RC_AI231282_AT Zinc finger protein 216 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95809 Hypothetical protein F22D6.2 [Caenorhabditis elegans] ref|NP_492005.1| F22D6.2 [Caenorhabditis elegans] 4.0E-98
blast CAE73100 Hypothetical protein CBG20480 [Caenorhabditis briggsae] 2.0E-83
blast AAF04101 IgG-immunoreactive zinc finger protein [Strongyloides stercoralis] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR002653 EMBL-EBI Zn-finger, A20-like 3.1E-10
Pfam IPR000058 EMBL-EBI Zn-finger, AN1-like 1.5E-23
Sequence
Target Sequence 
>C. ELEGANS:175002_AT
ttacattacatgcaccttctttcttttgtccacttcatactgtatctgggtcaactgatt
tccgttcctggcgatcagttgattcgtctctcattttgtactgtacacaccgtgttacga
attgaaccaactcgtagtgtatttgtgagcaaatcttgcaaacatttgcttatttgactt
atattccgactgttatttgtcttggattcgatgtgcgtattttttcagtaaaactggaaa
tttaccacaatgtttctagtgtatattttcccctggctttctcttttcctctttcccctt
caattttcaaaataatgctcgtttttgtgaaacttgaaaatcaacaatacataaaacgtt
ttggtgacattgctcggggaaagatgacggggaggagagtttctcatcttttttttcatc
atttcttcacaccacccaaaatttattagatcatgctattcaattcacgaaatcaacctc
tttctcccgcaaaacctaggaatttttcaaatttggcgctgcttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACATTACATGCACCTTCTTTCTT 435 683 22 Antisense
TTTCTTTTGTCCACTTCATACTGTA 67 673 41 Antisense
GTATCTGGGTCAACTGATTTCCGTT 131 453 63 Antisense
TTTCCGTTCCTGGCGATCAGTTGAT 618 669 80 Antisense
GATTCGTCTCTCATTTTGTACTGTA 383 433 102 Antisense
TTCTAGTGTATATTTTCCCCTGGCT 110 689 275 Antisense
AACGTTTTGGTGACATTGCTCGGGG 556 143 376 Antisense
TTCTTCACACCACCCAAAATTTATT 462 689 444 Antisense
ATTCACGAAATCAACCTCTTTCTCC 145 13 484 Antisense
TCTTTCTCCCGCAAAACCTAGGAAT 617 613 500 Antisense
TTTTCAAATTTGGCGCTGCTTTTCA 508 675 525 Antisense
Sequence Source Affymetrix Proprietary Database