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[175001_at]

Description CEK121H6R_rc /REP_DB=TREMBL Accession /GB=D66742 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 70      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 81      6grp_total > 80      4grp_total > 15      6grp_highest_sub > 04      6grp_cgc > 96      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 272.9
(2.7)
P 		144.2
(-3)
P 		252.4
(1.8)
P 		280
(3)
P 		136
B 342.2
(3)
P 		230.2
(-3)
P 		236.3
(-2.7)
P 		292.1
(0.3)
P 		112
C 294.3
(0.4)
P 		198.6
(-3)
P 		219.8
(-2.2)
P 		365.8
(3)
P 		167
avr 303.1
(2.5) 		191
(-3) 		236.2
(-0.8) 		312.6
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 250.3
(-0.9)
P 		224.9
(-1.8)
P 		260.4
(-0.5)
P 		287
(0.5)
P 		354
(3)
P 		192.6
(-3)
P 		161
B 305.3
(-0.6)
P 		249.7
(-2.2)
P 		219.4
(-3)
P 		438.3
(3)
P 		310.5
(-0.5)
P 		256.5
(-2)
P 		219
C 223.4
(-2)
P 		366.7
(2.2)
P 		258.9
(-0.9)
P 		392.6
(3)
P 		188.3
(-3)
P 		276.8
(-0.4)
P 		204
avr 259.7
(-2.2) 		280.4
(-1.2) 		246.2
(-2.8) 		372.6
(3) 		284.3
(-1.1) 		242
(-3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 99.3
(3)
P 		31.3
(-3)
P 		66
(0.1)
P 		41
(-2.1)
P 		68
B 109.1
(3)
P 		56.8
(-2.8)
P 		54.8
(-3)
P 		62.2
(-2.2)
P 		54
C 97.4
(3)
P 		57.1
(-3)
P 		76.6
(-0.1)
P 		61.7
(-2.3)
P 		40
avr 101.9
(3) 		48.4
(-3) 		65.8
(-1) 		55
(-2.3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 46.1
(-3)
P 		80
(0.4)
P 		56.7
(-2)
P 		72.8
(-0.4)
P 		106.8
(3)
P 		46.9
(-2.9)
P 		61
B 106.2
(1.4)
P 		83.1
(-0.5)
P 		53.3
(-3)
P 		116.1
(2.2)
P 		126.1
(3)
P 		95.7
(0.5)
P 		73
C 82.8
(-0.4)
P 		111.9
(3)
P 		65.9
(-2.4)
P 		79
(-0.9)
P 		60.9
(-3)
P 		92.7
(0.7)
P 		51
avr 78.4
(0) 		91.7
(2.1) 		58.6
(-3) 		89.3
(1.7) 		97.9
(3) 		78.4
(0) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22425
Sequence Type Exemplar sequence
Representative Public ID CEK121H6R NCBI
Target Description CEK121H6R_rc /REP_DB=TREMBL Accession /GB=D66742 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076142 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-8) (klp-8) mRNA, complete cds. 11/11 None
C15C7.2 ENSEMBL cdna:known chromosome:CEL140:X:3159466:3164400:1 gene:C15C7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3164167-3164390(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol klp-8
Ensembl C15C7.2
Entrez Gene 180606 Entrez gene
SwissProt Q18013 EMBL-EBI
WormBase CE38486 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39170 Kinesin-like protein protein 8 [Caenorhabditis elegans] ref|NP_508543.2| Kinesin-Like Protein family member (klp-8) [Caenorhabditis elegans] 0.0
blast T15510 hypothetical protein C15C7.2 - Caenorhabditis elegans 0.0
blast CAE68387 Hypothetical protein CBG14146 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000237 EMBL-EBI GRIP domain 2.7E-26
Pfam IPR000237 EMBL-EBI GRIP domain 2.7E-26
Sequence
Target Sequence 
>C. ELEGANS:175001_AT
tttttttgttcgcctattgtgtgtagatataccattcgttatcaagaaaagaaactgtat
agctcgcgggttaaatttctgtcttcttggtgtattcattttctggttcatatcacattt
tcctctactgtgactataattttttgtaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTTTGTTCGCCTATTGTGTGTA 358 675 48 Antisense
GTTCGCCTATTGTGTGTAGATATAC 375 441 55 Antisense
GTAGATATACCATTCGTTATCAAGA 496 455 70 Antisense
GAAAAGAAACTGTATAGCTCGCGGG 393 353 93 Antisense
AGCTCGCGGGTTAAATTTCTGTCTT 381 67 108 Antisense
ATTTCTGTCTTCTTGGTGTATTCAT 391 17 122 Antisense
CTTGGTGTATTCATTTTCTGGTTCA 96 219 133 Antisense
TTCTGGTTCATATCACATTTTCCTC 518 693 148 Antisense
TTCATATCACATTTTCCTCTACTGT 167 689 154 Antisense
CATTTTCCTCTACTGTGACTATAAT 391 215 163 Antisense
CTGTGACTATAATTTTTTGTACCAT 218 241 175 Antisense
Sequence Source Affymetrix Proprietary Database