[Home] | [Total List]

[175000_at]

Description CEK109C9R_rc /REP_DB=TREMBL Accession /GB=D72785 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk109c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 89      6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4277
1 2 3 4 range
A 1529.8
(-3)
P 		1758.2
(-2.6)
P 		1578.7
(-2.9)
P 		4757.8
(3)
P 		3228
B 1566.8
(-2.5)
P 		1544.4
(-2.6)
P 		1241.3
(-3)
P 		5518.4
(3)
P 		4277
C 1560.1
(-3)
P 		1805.6
(-2.5)
P 		1696.8
(-2.7)
P 		4747.9
(3)
P 		3188
avr 1552.2
(-2.9) 		1702.7
(-2.7) 		1505.6
(-3) 		5008
(3) 		3502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1407
1 2 3 4 5 6 range
A 962.4
(-2.4)
P 		1097.6
(-1.8)
P 		810.7
(-3)
P 		863.6
(-2.8)
P 		2218
(3)
P 		1808.7
(1.3)
P 		1407
B 1312.3
(-1.3)
P 		1090.7
(-2.5)
P 		990.3
(-3)
P 		1277.7
(-1.5)
P 		2032.7
(2.5)
P 		2128.8
(3)
P 		1139
C 1008.7
(-2.6)
P 		1270.4
(-0.8)
P 		945.2
(-3)
P 		1029.8
(-2.4)
P 		1756.6
(2.6)
P 		1821.5
(3)
P 		876
avr 1094.5
(-2) 		1152.9
(-1.7) 		915.4
(-3) 		1057
(-2.2) 		2002.4
(3) 		1919.7
(2.5) 		1087
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 888
1 2 3 4 range
A 557
(0.3)
P 		381.7
(-3)
P 		412.7
(-2.4)
P 		696.5
(3)
P 		315
B 499.6
(-1.6)
P 		381.4
(-2.4)
P 		287.6
(-3)
P 		1176
(3)
P 		888
C 516.4
(-3)
P 		519.1
(-2.9)
P 		591.4
(-1.4)
P 		800.6
(3)
P 		284
avr 524.3
(-1.7) 		427.4
(-3) 		430.6
(-3) 		891
(3) 		464

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 649
1 2 3 4 5 6 range
A 177.4
(-3)
P 		390.4
(-0.4)
P 		176.6
(-3)
P 		219
(-2.5)
P 		669.3
(3)
P 		440.4
(0.2)
P 		493
B 456.6
(-0.8)
P 		363.1
(-1.7)
P 		240.5
(-3)
P 		338.4
(-2)
P 		825.9
(3)
P 		793.8
(2.7)
P 		585
C 373.9
(-0.5)
P 		387.6
(-0.3)
P 		240.6
(-2.5)
P 		207.1
(-3)
P 		568.4
(2.4)
P 		609.8
(3)
P 		403
avr 336
(-1.5) 		380.4
(-0.9) 		219.2
(-3) 		254.8
(-2.5) 		687.9
(3) 		614.7
(2.1) 		469
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20105
Sequence Type Exemplar sequence
Representative Public ID CEK109C9R NCBI
Target Description CEK109C9R_rc /REP_DB=TREMBL Accession /GB=D72785 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk109c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170835(11), NM_170836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170835 NCBI Caenorhabditis elegans F32B5.6a (F32B5.6) mRNA, complete cds. 11/11 None
NM_170836 NCBI Caenorhabditis elegans F32B5.6b (F32B5.6) mRNA, complete cds. 11/11 None
F32B5.6a ENSEMBL cdna:known chromosome:CEL140:I:2668168:2672913:1 gene:F32B5.6 11/11 None
F32B5.6b ENSEMBL cdna:known chromosome:CEL140:I:2668169:2672409:1 gene:F32B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171827 4 2 NM_170835 175000_at (11)
NM_170836 175000_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2672095-2672397(+) 100.0 100.0
Public Domain and Genome References
Ensembl F32B5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR25644 Hypothetical protein F32B5.6a [Caenorhabditis elegans] ref|NP_740819.2| F32B5.6a [Caenorhabditis elegans] 0.0
blast AAR25645 Hypothetical protein F32B5.6b [Caenorhabditis elegans] ref|NP_740820.2| F32B5.6b [Caenorhabditis elegans] 0.0
blast CAE60492 Hypothetical protein CBG04107 [Caenorhabditis briggsae] 0.0
blast T29870 hypothetical protein F32B5.6 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:175000_AT
gtaacttatagactgtgtgcacacatttgtgtctctatcacctcatacattaatacctct
tcttgttgtattttttgcatttagtgtttttcatcgtcatcatcattgattgttactctt
caactgcccccatcaggttttactgtgtagtctccttttttgtacataggccacaattgg
taggctctcaattatatccttatctcctccaacaagctatttttttgcaattctctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACTTATAGACTGTGTGCACACA 628 461 20 Antisense
CACATTTGTGTCTCTATCACCTCAT 665 195 41 Antisense
CACCTCATACATTAATACCTCTTCT 597 199 58 Antisense
GCATTTAGTGTTTTTCATCGTCATC 158 309 96 Antisense
ATTGATTGTTACTCTTCAACTGCCC 506 3 124 Antisense
TGCCCCCATCAGGTTTTACTGTGTA 366 577 144 Antisense
TACTGTGTAGTCTCCTTTTTTGTAC 662 643 160 Antisense
AGGCCACAATTGGTAGGCTCTCAAT 608 53 187 Antisense
GGCTCTCAATTATATCCTTATCTCC 75 539 202 Antisense
TTATCTCCTCCAACAAGCTATTTTT 13 681 219 Antisense
AAGCTATTTTTTTGCAATTCTCTCG 22 149 233 Antisense
Sequence Source Affymetrix Proprietary Database