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[174999_at]

Description CEK112G6R_rc /REP_DB=TREMBL Accession /GB=D73021 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 67      6grp_total > 93      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2672
1 2 3 4 range
A 2398.3
(-1.1)
P 		2540.7
(-0.8)
P 		4229.1
(3)
P 		1557.6
(-3)
P 		2672
B 2428.7
(-1)
P 		2720.5
(-0)
P 		3583.4
(3)
P 		1859.6
(-3)
P 		1724
C 2064.9
(-2.3)
P 		2673.7
(0.1)
P 		3375.8
(3)
P 		1899
(-3)
P 		1477
avr 2297.3
(-1.4) 		2645
(-0.3) 		3729.4
(3) 		1772.1
(-3) 		1957

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1525
1 2 3 4 5 6 range
A 1857.7
(-0.8)
P 		1921.8
(-0.4)
P 		1512.2
(-3)
P 		1786.5
(-1.3)
P 		2461.1
(3)
P 		1766.2
(-1.4)
P 		949
B 1701.6
(0.9)
P 		2057.8
(2.7)
P 		936.3
(-3)
P 		2114.9
(3)
P 		1933.5
(2.1)
P 		1658.5
(0.7)
P 		1179
C 1879.1
(0.9)
P 		1790
(-0.4)
P 		1724.6
(-1.4)
P 		1620.1
(-2.9)
P 		2018.5
(3)
P 		1616.4
(-3)
P 		402
avr 1812.8
(0.4) 		1923.2
(1.3) 		1391
(-3) 		1840.5
(0.6) 		2137.7
(3) 		1680.4
(-0.7) 		747
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 949
1 2 3 4 range
A 873.2
(1.4)
P 		551.5
(-0.8)
P 		1105.6
(3)
P 		228
(-3)
P 		878
B 774.5
(2.2)
P 		671.9
(0.8)
P 		830.3
(3)
P 		396.3
(-3)
P 		434
C 683.5
(-0.5)
P 		768.7
(0.1)
P 		1176.6
(3)
P 		320.2
(-3)
P 		856
avr 777.1
(0.8) 		664
(-0.1) 		1037.5
(3) 		314.8
(-3) 		723

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 342.5
(-2.8)
P 		683.5
(2.1)
P 		329.3
(-3)
P 		453.1
(-1.2)
P 		742.7
(3)
P 		430
(-1.5)
P 		413
B 592.1
(0.9)
P 		684.9
(1.9)
P 		227.4
(-3)
P 		560.2
(0.6)
P 		785.6
(3)
P 		618.4
(1.2)
P 		558
C 696.5
(3)
P 		546.2
(0.6)
P 		438.9
(-1.2)
P 		325.8
(-3)
P 		653.2
(2.3)
P 		541.1
(0.5)
P 		371
avr 543.7
(0.2) 		638.2
(1.6) 		331.9
(-3) 		446.4
(-1.3) 		727.2
(3) 		529.8
(0) 		395
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20907
Sequence Type Exemplar sequence
Representative Public ID CEK112G6R NCBI
Target Description CEK112G6R_rc /REP_DB=TREMBL Accession /GB=D73021 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065937 NCBI Caenorhabditis elegans F42A10.5 (F42A10.5) mRNA, complete cds. 11/11 None
F42A10.5.1 ENSEMBL cdna:known chromosome:CEL140:III:6171087:6172740:-1 gene:F42A10.5 11/11 None
F42A10.5.2 ENSEMBL cdna:known chromosome:CEL140:III:6171180:6172742:-1 gene:F42A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6171179-6171526(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A10.5
Entrez Gene 175872 Entrez gene
SwissProt Q20310 EMBL-EBI
WormBase CE01296 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19076 Hypothetical protein F42A10.5 [Caenorhabditis elegans] ref|NP_498338.1| F42A10.5 [Caenorhabditis elegans] 4.0E-72
blast CAE73611 Hypothetical protein CBG21101 [Caenorhabditis briggsae] 3.0E-52
Sequence
Target Sequence 
>C. ELEGANS:174999_AT
atagggtagttgacagcggacggtgtggtttgagaattcacgtgaatcgaattttggtat
cttttttcgaaatcttatgcatttcgaaggtcgtctcctattttcggtgtcacgccaaaa
atctcaaatccgcctgtttcgcgtgtcgtcggttacggtttcaacgaaagaaagtttcaa
aatgttttccccatgagcactttgctctttttctacttgtgctatttatacaagtgctct
atcatattctctttgcccaattccctttcggattcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGGGTAGTTGACAGCGGACGGTG 291 5 40 Antisense
GCGGACGGTGTGGTTTGAGAATTCA 651 293 55 Antisense
GCATTTCGAAGGTCGTCTCCTATTT 106 307 118 Antisense
TTCGGTGTCACGCCAAAAATCTCAA 196 695 142 Antisense
AAATCTCAAATCCGCCTGTTTCGCG 645 117 158 Antisense
GTTTCAAAATGTTTTCCCCATGAGC 79 449 213 Antisense
TTCCCCATGAGCACTTTGCTCTTTT 254 697 226 Antisense
TTGCTCTTTTTCTACTTGTGCTATT 577 703 241 Antisense
GTGCTATTTATACAAGTGCTCTATC 508 479 258 Antisense
AAGTGCTCTATCATATTCTCTTTGC 382 159 271 Antisense
CCCAATTCCCTTTCGGATTCAATCA 24 257 295 Antisense
Sequence Source Affymetrix Proprietary Database