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[174997_at]

Description CEK019CXR_rc /REP_DB=TREMBL Accession /GB=D32591 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk19c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 722
1 2 3 4 range
A 1293.3
(3)
P 		999.4
(0.2)
P 		659.8
(-3)
P 		1143.5
(1.6)
P 		634
B 1370.8
(3)
P 		879.2
(-2.2)
P 		805.3
(-3)
P 		933
(-1.6)
P 		566
C 1350.5
(3)
P 		848.1
(-1.3)
P 		648.9
(-3)
P 		844.3
(-1.3)
P 		702
avr 1338.2
(3) 		908.9
(-1.1) 		704.7
(-3) 		973.6
(-0.5) 		634

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 694
1 2 3 4 5 6 range
A 1063.3
(3)
P 		743.9
(0.1)
P 		574.5
(-1.4)
P 		402.9
(-3)
P 		534.8
(-1.8)
P 		482.7
(-2.3)
P 		660
B 1087.7
(3)
P 		840.5
(0.7)
P 		567.6
(-1.8)
P 		621.1
(-1.3)
P 		444
(-3)
P 		477.8
(-2.7)
P 		644
C 820.5
(2.4)
P 		867.6
(3)
P 		512.3
(-1.5)
P 		462.3
(-2.1)
P 		393.4
(-3)
P 		491.7
(-1.8)
P 		474
avr 990.5
(3) 		817.3
(1.1) 		551.5
(-1.9) 		495.4
(-2.6) 		457.4
(-3) 		484.1
(-2.7) 		533
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 470.9
(3)
P 		216.9
(-2)
P 		172.5
(-2.9)
P 		167.4
(-3)
P 		304
B 437.1
(3)
P 		217.2
(-2.3)
P 		186.6
(-3)
P 		198.8
(-2.7)
P 		251
C 447
(3)
P 		243.8
(-1)
P 		226.1
(-1.4)
P 		142.4
(-3)
P 		305
avr 451.7
(3) 		226
(-1.8) 		195.1
(-2.5) 		169.5
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 196
(0.5)
P 		264.6
(3)
P 		125.1
(-2.2)
P 		102.2
(-3)
P 		161.4
(-0.8)
P 		117.5
(-2.4)
P 		162
B 378.5
(3)
P 		279.8
(0.5)
P 		137.8
(-3)
P 		164.5
(-2.3)
P 		180.4
(-1.9)
P 		178.2
(-2)
P 		241
C 304.1
(3)
P 		264.7
(1.9)
P 		130.4
(-1.9)
P 		93
(-3)
P 		127.3
(-2)
P 		164.6
(-1)
P 		211
avr 292.9
(3) 		269.7
(2.2) 		131.1
(-2.6) 		119.9
(-3) 		156.4
(-1.7) 		153.4
(-1.8) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174997_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22280
Sequence Type Exemplar sequence
Representative Public ID CEK019CXR NCBI
Target Description CEK019CXR_rc /REP_DB=TREMBL Accession /GB=D32591 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk19c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077882(11), NM_182454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077882 NCBI Caenorhabditis elegans NeuroLiGin family member (nlg-1) (nlg-1) mRNA, complete cds. 11/11 A 
NM_182454 NCBI Caenorhabditis elegans NeuroLiGin family member (nlg-1) (nlg-1) mRNA, complete cds. 11/11 A 
C40C9.5a ENSEMBL cdna:known chromosome:CEL140:X:13625329:13631036:-1 gene:C40C9.5 11/11 A 
C40C9.5b ENSEMBL cdna:known chromosome:CEL140:X:13625352:13631014:-1 gene:C40C9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13625338-13625755(-) 100.0 100.0
Public Domain and Genome References
Ensembl C40C9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94208 Hypothetical protein C40C9.5a [Caenorhabditis elegans] emb|CAA19446.1| Hypothetical protein C40C9.5a [Caenorhabditis elegans] ref|NP_510283.1| NeuroLiGin family member (nlg-1) [Caenorhabditis elegans] 0.0
blast CAD57691 Hypothetical protein C40C9.5b [Caenorhabditis elegans] emb|CAD57709.1| Hypothetical protein C40C9.5b [Caenorhabditis elegans] ref|NP_872254.1| NeuroLiGin family member (nlg-1) [Caenorhabditis elegans] 0.0
blast CAE63107 Hypothetical protein CBG07402 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510283.1 1 684-706
NP_872254.1 1 684-706
C40C9.5a 1 684-706
C40C9.5b 1 684-706
Sequence
Target Sequence 
>C. ELEGANS:174997_AT
caaaatagccgtttgactgctgctcaagcaccgacattggaagagatacaggtctaactg
cttcatcaattcaagtttttgtttcacacccaatcaactacaccagtcattatcaaaatt
tcaattttattcttttttcaaatttttattactcgtataaaatctgaaatttcccatcca
ccgctcatgatctccaacttctttcgtttccctcctgaaatgtacacatccattgttgcg
gtgttttgtacatattttccttttgcaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATAGCCGTTTGACTGCTGCTC 99 191 51 Antisense
GAGATACAGGTCTAACTGCTTCATC 337 397 93 Antisense
CAGGTCTAACTGCTTCATCAATTCA 186 209 99 Antisense
TTTTGTTTCACACCCAATCAACTAC 558 677 127 Antisense
CACCCAATCAACTACACCAGTCATT 173 201 137 Antisense
TACACCAGTCATTATCAAAATTTCA 577 641 149 Antisense
TAAAATCTGAAATTTCCCATCCACC 90 641 208 Antisense
TTTCGTTTCCCTCCTGAAATGTACA 442 667 252 Antisense
GAAATGTACACATCCATTGTTGCGG 266 361 267 Antisense
CATCCATTGTTGCGGTGTTTTGTAC 224 211 277 Antisense
TGTACATATTTTCCTTTTGCAAAGT 631 559 297 Antisense
Sequence Source Affymetrix Proprietary Database