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[174994_at]

Description CEK059GXR_rc /REP_DB=TREMBL Accession /GB=D65594 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk59g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 47      6grp_total > 82      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8211
1 2 3 4 range
A 6921
(0.2)
P 		3358.4
(-3)
P 		4495.9
(-2)
P 		10068.5
(3)
P 		6710
B 6940.6
(-0.3)
P 		4108.6
(-3)
P 		4510.3
(-2.6)
P 		10483.4
(3)
P 		6375
C 6768.2
(-0.6)
P 		3462.7
(-3)
P 		4860.5
(-2)
P 		11569.8
(3)
P 		8107
avr 6876.6
(-0.3) 		3643.2
(-3) 		4622.2
(-2.2) 		10707.2
(3) 		7064

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2707
1 2 3 4 5 6 range
A 3277.9
(-2.7)
P 		3580.3
(-1.8)
P 		3514.6
(-2)
P 		3160.6
(-3)
P 		5305
(3)
P 		3807.2
(-1.2)
P 		2144
B 2597.6
(-3)
P 		4444.6
(3)
P 		3051.8
(-1.5)
P 		4251.4
(2.4)
P 		3901.2
(1.2)
P 		3481.7
(-0.1)
P 		1847
C 3487.8
(-2.8)
P 		3925.2
(-0.7)
P 		3907.5
(-0.8)
P 		4667.2
(3)
P 		3763
(-1.5)
P 		3457.1
(-3)
P 		1210
avr 3121.1
(-3) 		3983.4
(1.3) 		3491.3
(-1.2) 		4026.4
(1.5) 		4323.1
(3) 		3582
(-0.7) 		1202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1791
1 2 3 4 range
A 2519.9
(3)
P 		729
(-3)
P 		1175.3
(-1.5)
P 		1473.8
(-0.5)
P 		1791
B 2213.3
(2.9)
P 		1014.7
(-3)
P 		1045.1
(-2.9)
P 		2234
(3)
P 		1219
C 2240.5
(3)
P 		995.6
(-3)
P 		1694
(0.4)
P 		1950.9
(1.6)
P 		1245
avr 2324.6
(3) 		913.1
(-3) 		1304.8
(-1.3) 		1886.2
(1.1) 		1412

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 997
1 2 3 4 5 6 range
A 604.3
(-3)
P 		1273.3
(1)
P 		765.4
(-2)
P 		801.6
(-1.8)
P 		1600.8
(3)
P 		926.9
(-1.1)
P 		997
B 903.8
(-1.8)
P 		1479.4
(2.2)
P 		741.1
(-3)
P 		1126.1
(-0.3)
P 		1585
(3)
P 		1298.3
(1)
P 		844
C 1292.8
(3)
P 		1197.7
(1.4)
P 		994.5
(-2.1)
P 		938.6
(-3)
P 		1217.7
(1.7)
P 		1157.3
(0.7)
P 		354
avr 933.6
(-2.1) 		1316.8
(1.6) 		833.7
(-3) 		955.4
(-1.8) 		1467.8
(3) 		1127.5
(-0.2) 		634
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22273
Sequence Type Exemplar sequence
Representative Public ID CEK059GXR NCBI
Target Description CEK059GXR_rc /REP_DB=TREMBL Accession /GB=D65594 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk59g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078422 NCBI Caenorhabditis elegans F11C7.5 (F11C7.5) mRNA, complete cds. 11/11 None
F11C7.5 ENSEMBL cdna:known chromosome:CEL140:X:17420133:17421359:-1 gene:F11C7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17420141-17420550(-) 93.64 100.0
Public Domain and Genome References
Gene Title
Ensembl F11C7.5
Entrez Gene 181772 Entrez gene
SwissProt O45346 EMBL-EBI
WormBase CE17657 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69016 Hypothetical protein F11C7.5 [Caenorhabditis elegans] ref|NP_510823.1| F11C7.5 [Caenorhabditis elegans] 1.0E-111
blast CAE69677 Hypothetical protein CBG15929 [Caenorhabditis briggsae] 1.0E-96
blast CAE56484 Hypothetical protein CBG24198 [Caenorhabditis briggsae] 7.0E-62
Sequence
Target Sequence 
>C. ELEGANS:174994_AT
atttccctctaattgttttctatgagctcgcaccctagtgcaattatttaattttttatt
tttttttctctttttggcccctcctaccgattcgctaagctatttaagatctcgatatct
tgaatcgtgtacatttttcgaaagcttattaaaaaatagctaaaatagctagataactgg
ttaatcagttatcgcagcgaattggatggaaagtatcgctggataactgattaatttcgt
ccatacctccgcttatgtgctcttttgtgcttcaatcctgaatttacctgatccgtaaat
gatttgtctcagtactgtgtaccctcccctgaaaaacgtttggcccagtgcttgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCCTCTAATTGTTTTCTATGA 415 17 31 Antisense
TAATTGTTTTCTATGAGCTCGCACC 239 635 40 Antisense
GAGCTCGCACCCTAGTGCAATTATT 568 387 54 Antisense
CCTCCTACCGATTCGCTAAGCTATT 283 265 110 Antisense
GGTTAATCAGTTATCGCAGCGAATT 605 505 209 Antisense
AACTGATTAATTTCGTCCATACCTC 595 141 255 Antisense
CGCTTATGTGCTCTTTTGTGCTTCA 9 255 280 Antisense
TGCTCTTTTGTGCTTCAATCCTGAA 160 581 288 Antisense
CAATCCTGAATTTACCTGATCCGTA 94 183 303 Antisense
TTTGTCTCAGTACTGTGTACCCTCC 400 667 333 Antisense
AAACGTTTGGCCCAGTGCTTGATTT 571 125 364 Antisense
Sequence Source Affymetrix Proprietary Database