[Home] | [Total List]

[174993_at]

Description CEK116B2R_rc /REP_DB=TREMBL Accession /GB=D73247 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 28      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 50      6grp_total > 27      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 585.4
(0.8)
P 		494.3
(-0.6)
P 		330.2
(-3)
P 		733.5
(3)
P 		403
B 565.5
(1.3)
P 		462.7
(-1.5)
P 		408.1
(-3)
P 		628.6
(3)
P 		221
C 610.9
(0.6)
P 		436.4
(-3)
P 		473.8
(-2.2)
P 		729.2
(3)
P 		293
avr 587.3
(0.8) 		464.5
(-1.8) 		404
(-3) 		697.1
(3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 650.7
(3)
P 		540.3
(0.6)
P 		412.4
(-2.2)
P 		373.4
(-3)
P 		456.3
(-1.2)
P 		479.9
(-0.7)
P 		277
B 565.4
(3)
P 		522.2
(1.5)
P 		393.3
(-3)
P 		484.1
(0.2)
P 		431.3
(-1.7)
P 		500.9
(0.8)
P 		172
C 572.7
(3)
P 		498.6
(0.5)
P 		444.1
(-1.3)
P 		392.2
(-3)
P 		453.4
(-1)
P 		496.2
(0.5)
P 		181
avr 596.3
(3) 		520.4
(0.5) 		416.6
(-3) 		416.6
(-3) 		447
(-2) 		492.3
(-0.5) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 213.1
(3)
P 		107.3
(-2)
P 		86.3
(-3)
P 		107.4
(-2)
P 		127
B 180.3
(3)
P 		114.3
(-1.6)
P 		94.6
(-3)
P 		134
(-0.2)
P 		86
C 202.2
(3)
P 		125.5
(-2.8)
P 		165.1
(0.2)
P 		123
(-3)
P 		79
avr 198.5
(3) 		115.7
(-3) 		115.3
(-3) 		121.5
(-2.6) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 120
(-1.2)
P 		192.2
(3)
P 		89.8
(-3)
P 		94.7
(-2.7)
P 		137.7
(-0.2)
P 		116.8
(-1.4)
P 		102
B 196.7
(3)
P 		173.8
(1.6)
P 		95.5
(-3)
P 		128.2
(-1.1)
P 		175.2
(1.7)
P 		186.8
(2.4)
P 		101
C 212.3
(3)
P 		152.1
(0.3)
P 		113
(-1.5)
P 		78.9
(-3)
P 		146.7
(0)
P 		166.1
(0.9)
P 		133
avr 176.3
(3) 		172.7
(2.7) 		99.4
(-3) 		100.6
(-2.9) 		153.2
(1.2) 		156.6
(1.5) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22446
Sequence Type Exemplar sequence
Representative Public ID CEK116B2R NCBI
Target Description CEK116B2R_rc /REP_DB=TREMBL Accession /GB=D73247 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076076 NCBI Caenorhabditis elegans T02C5.2 (T02C5.2) mRNA, complete cds. 11/11 None
T02C5.2 ENSEMBL cdna:known chromosome:CEL140:X:2690342:2692161:1 gene:T02C5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2691698-2691979(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02C5.2
Entrez Gene 180567 Entrez gene
SwissProt Q22094 EMBL-EBI
WormBase CE04849 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36869 Hypothetical protein T02C5.2 [Caenorhabditis elegans] ref|NP_508477.1| T02C5.2 [Caenorhabditis elegans] 1.0E-55
blast CAE58844 Hypothetical protein CBG02063 [Caenorhabditis briggsae] 5.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508477.1 1 28-50
T02C5.2 1 28-50
Sequence
Target Sequence 
>C. ELEGANS:174993_AT
ttctccccccttgcaaaatatagtccggttaatactcaagtagtatttctcctgtattgt
ttctgtatcgtttcccaccatcgaaacccataccatgtttctgtgcaattccattttcaa
actccatgatctttttccctgatgcttttattttccatttcaattccaaagaccttgctg
cttctataggtgtcctacaattatggctttaactttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCCCCCTTGCAAAATATAGTC 105 691 36 Antisense
ATAGTCCGGTTAATACTCAAGTAGT 226 13 55 Antisense
GTAGTATTTCTCCTGTATTGTTTCT 150 457 75 Antisense
TGTATTGTTTCTGTATCGTTTCCCA 127 561 88 Antisense
CTGTGCAATTCCATTTTCAAACTCC 515 239 136 Antisense
TTTCAAACTCCATGATCTTTTTCCC 66 669 150 Antisense
GATCTTTTTCCCTGATGCTTTTATT 668 417 163 Antisense
CCTGATGCTTTTATTTTCCATTTCA 613 265 173 Antisense
TTCAATTCCAAAGACCTTGCTGCTT 538 683 194 Antisense
TTGCTGCTTCTATAGGTGTCCTACA 311 703 210 Antisense
TACAATTATGGCTTTAACTTTTTCA 505 639 231 Antisense
Sequence Source Affymetrix Proprietary Database