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[174992_at]

Description CEK133A2R_rc /REP_DB=TREMBL Accession /GB=D65218 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk133a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 30      6grp_total > 17      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 791
1 2 3 4 range
A 1117.3
(3)
P
507.8
(-1.7)
P
346.4
(-3)
P
677.8
(-0.4)
P
771
B 1037.8
(3)
P
575.9
(-0.9)
P
326.2
(-3)
P
637
(-0.4)
P
712
C 975.7
(3)
P
590.7
(-0.8)
P
374.4
(-3)
P
606.7
(-0.7)
P
601
avr 1043.6
(3)
558.1
(-1.2)
349
(-3)
640.5
(-0.5)
695

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1190
1 2 3 4 5 6 range
A 1518.9
(3)
P
808.9
(-0.8)
P
462.1
(-2.7)
P
402.7
(-3)
P
540.4
(-2.3)
P
560.2
(-2.2)
P
1116
B 1559.4
(3)
P
954.8
(-0.3)
P
467
(-3)
P
459.7
(-3)
P
471.8
(-2.9)
P
501.1
(-2.8)
P
1100
C 1424.5
(3)
P
851.8
(-0.3)
P
490.7
(-2.3)
P
369.8
(-3)
P
588.3
(-1.8)
P
385.9
(-2.9)
P
1055
avr 1500.9
(3)
871.8
(-0.5)
473.3
(-2.7)
410.7
(-3)
533.5
(-2.3)
482.4
(-2.6)
1090
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 406.8
(3)
P
110.2
(-2.6)
P
90.5
(-3)
P
99.2
(-2.8)
P
316
B 331
(3)
P
142.2
(-1.4)
P
75.6
(-3)
P
135.7
(-1.6)
P
255
C 323
(3)
P
169.8
(-1.2)
P
130.5
(-2.2)
P
102.3
(-3)
P
221
avr 353.6
(3)
140.7
(-2)
98.9
(-3)
112.4
(-2.7)
255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 280
(2.8)
P
287.7
(3)
P
100.6
(-3)
P
102.1
(-3)
P
163.1
(-1)
P
136.4
(-1.9)
P
187
B 542.6
(3)
P
317.8
(-0.1)
P
113.4
(-3)
P
121.8
(-2.9)
P
191.7
(-1.9)
P
186.9
(-2)
P
429
C 528
(3)
P
259.9
(-0.5)
P
124.9
(-2.3)
P
74.4
(-3)
P
190.4
(-1.5)
P
129.2
(-2.3)
P
454
avr 450.2
(3)
288.5
(0.2)
113
(-2.8)
99.4
(-3)
181.7
(-1.6)
150.8
(-2.1)
351
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20049
Sequence Type Exemplar sequence
Representative Public ID CEK133A2R NCBI
Target Description CEK133A2R_rc /REP_DB=TREMBL Accession /GB=D65218 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk133a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
ZC123.3 ENSEMBL cdna:known chromosome:CEL140:I:803404:835286:1 gene:ZC123.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:834973-835269(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC123.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97603 Hypothetical protein ZC123.3 [Caenorhabditis elegans] ref|NP_490781.1| ZC123.3 [Caenorhabditis elegans] 0.0
blast H87721 protein ZC123.2 [imported] - Caenorhabditis elegans 0.0
blast CAE61304 Hypothetical protein CBG05137 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.99999999200839E-11
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 2.99999990500336E-15
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 2.99999989294975E-8
Pfam IPR001356 EMBL-EBI Homeobox 2.5E-11
Pfam IPR001356 EMBL-EBI Homeobox 1.3E-21
Pfam IPR001356 EMBL-EBI Homeobox 2.3E-19
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.1E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Sequence
Target Sequence
>C. ELEGANS:174992_AT
cgcctgcagcttctcataataattaataatttttcttaccatgcacaatgattttgataa
atatatatatatatagtcatcaggattgccccctttctaggatatgtttttttttgtctt
cacacaattttcccattttctatgataagaattatttctttgtccggttgacacatgtag
atgttccccttccaatttttaatagatttctattctagttttttgcaggcctcactattc
tattgcaat


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
CGCCTGCAGCTTCTCATAATAATTA 571 255 28 Antisense
ATAATTTTTCTTACCATGCACAATG 665 25 53 Antisense
ATATAGTCATCAGGATTGCCCCCTT 552 19 98 Antisense
ATTGCCCCCTTTCTAGGATATGTTT 630 5 112 Antisense
TGTTTTTTTTTGTCTTCACACAATT 384 561 132 Antisense
TCTTCACACAATTTTCCCATTTTCT 437 615 144 Antisense
CAATTTTCCCATTTTCTATGATAAG 492 179 152 Antisense
GAATTATTTCTTTGTCCGGTTGACA 434 325 176 Antisense
TTGACACATGTAGATGTTCCCCTTC 447 703 195 Antisense
TATTCTAGTTTTTTGCAGGCCTCAC 77 663 238 Antisense
GCAGGCCTCACTATTCTATTGCAAT 385 311 252 Antisense
Sequence Source Affymetrix Proprietary Database