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[174991_at]

Description CEK011DZR_rc /REP_DB=TREMBL Accession /GB=D27514 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk11d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 50      6grp_total > 37      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 665.4
(3)
P 		351.9
(-2.3)
P 		308.4
(-3)
P 		392.8
(-1.6)
P 		357
B 657
(3)
P 		416.8
(-1.9)
P 		362.7
(-3)
P 		567.8
(1.2)
P 		294
C 708.4
(3)
P 		355.3
(-3)
P 		424.5
(-1.8)
P 		414.5
(-2)
P 		353
avr 676.9
(3) 		374.7
(-2.8) 		365.2
(-3) 		458.4
(-1.2) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 657.3
(3)
P 		616.1
(2.3)
P 		321
(-3)
P 		327
(-2.9)
P 		503.6
(0.3)
P 		583.6
(1.7)
P 		336
B 747.7
(3)
P 		678.2
(1.9)
P 		381.4
(-2.6)
P 		509.7
(-0.7)
P 		358.4
(-3)
P 		633.8
(1.2)
P 		389
C 575
(1.5)
P 		639.7
(2.9)
P 		398.3
(-2.3)
P 		437.2
(-1.5)
P 		366.8
(-3)
P 		646.6
(3)
P 		280
avr 660
(3) 		644.7
(2.7) 		366.9
(-3) 		424.6
(-1.8) 		409.6
(-2.1) 		621.3
(2.2) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 242.3
(3)
P 		76.4
(-2.4)
P 		80.6
(-2.3)
P 		57.5
(-3)
P 		185
B 209.5
(3)
P 		102.9
(-2.1)
P 		84
(-3)
P 		121
(-1.2)
P 		126
C 234.5
(3)
P 		102.2
(-1.8)
P 		148
(-0.2)
P 		69.9
(-3)
P 		165
avr 228.8
(3) 		93.8
(-2.5) 		104.2
(-2.1) 		82.8
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 121.2
(-0.9)
P 		219.1
(3)
P 		69.9
(-3)
P 		82.9
(-2.5)
P 		152
(0.3)
P 		142.1
(-0.1)
P 		149
B 260.1
(3)
P 		225.7
(1.8)
P 		92.6
(-3)
P 		135
(-1.5)
P 		145.6
(-1.1)
P 		236.3
(2.1)
P 		168
C 213.1
(2.8)
P 		195.2
(2)
P 		101.4
(-2.4)
P 		87.9
(-3)
P 		118.7
(-1.6)
P 		216.5
(3)
P 		129
avr 198.1
(2.3) 		213.3
(3) 		88
(-3) 		101.9
(-2.3) 		138.8
(-0.6) 		198.3
(2.3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20908
Sequence Type Exemplar sequence
Representative Public ID CEK011DZR NCBI
Target Description CEK011DZR_rc /REP_DB=TREMBL Accession /GB=D27514 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk11d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C26E6.9b ENSEMBL cdna:known chromosome:CEL140:III:4922407:4925998:-1 gene:C26E6.9 11/11 None
C26E6.9a ENSEMBL cdna:known chromosome:CEL140:III:4922414:4930165:-1 gene:C26E6.9 11/11 None
C26E6.9c ENSEMBL cdna:known chromosome:CEL140:III:4922418:4930092:-1 gene:C26E6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4922416-4922845(-) 100.0 100.0
Public Domain and Genome References
Ensembl C26E6.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21163 Set (trithorax/polycomb) domain containing protein 2, isoform b [Caenorhabditis elegans] ref|NP_498041.1| SET (trithorax/polycomb) domain containing family member (set-2) [Caenorhabditis elegans] 0.0
blast AAK67215 Set (trithorax/polycomb) domain containing protein 2, isoform c [Caenorhabditis elegans] ref|NP_498039.1| SET (trithorax/polycomb) domain containing family member (set-2) [Caenorhabditis elegans] 0.0
blast H88444 protein C26E6.12 [imported] - Caenorhabditis elegans 0.0
blast AAK67214 Set (trithorax/polycomb) domain containing protein 2, isoform a [Caenorhabditis elegans] ref|NP_498040.1| SET (trithorax/polycomb) domain containing family member (set-2) [Caenorhabditis elegans] sp|Q18221|SET2_CAEEL Protein set-2 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.4E-8
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Sequence
Target Sequence 
>C. ELEGANS:174991_AT
gtatcattgttattcattctccttatggtgagctgagaaatccttgtattattagtggaa
ttcgttattgttgaacaattgtttgagtgtatgttatacgatacaagctccccttttcaa
ctagatacttctacattttatcaaatctcttgtttctctataggtttacgaattgttttc
ttggaggatttcctctacagtctcttgtttatctctctatacttgaacatctctgaaatc
attcattttcccttgaactctgaacaattggtctttccaaaacaacctcccattcaagtc
tttattcattcgtgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCATTGTTATTCATTCTCCTTA 183 455 69 Antisense
ATGTTATACGATACAAGCTCCCCTT 61 47 159 Antisense
CTCCCCTTTTCAACTAGATACTTCT 460 233 176 Antisense
AAATCTCTTGTTTCTCTATAGGTTT 114 119 211 Antisense
TGGAGGATTTCCTCTACAGTCTCTT 607 549 250 Antisense
TACAGTCTCTTGTTTATCTCTCTAT 66 645 264 Antisense
ATCTCTCTATACTTGAACATCTCTG 415 33 279 Antisense
TCATTCATTTTCCCTTGAACTCTGA 612 619 307 Antisense
GAACTCTGAACAATTGGTCTTTCCA 514 349 323 Antisense
CAAAACAACCTCCCATTCAAGTCTT 201 191 346 Antisense
TTCAAGTCTTTATTCATTCGTGTTT 688 683 361 Antisense
Sequence Source Affymetrix Proprietary Database