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[174986_at]

Description CEK072AZR_rc /REP_DB=TREMBL Accession /GB=D65989 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk72a12 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 7.4
(-3)
A 		73.9
(3)
A 		31.3
(-0.8)
A 		10.2
(-2.7)
A 		67
B 40.7
(3)
A 		11.3
(-2.3)
A 		10.6
(-2.4)
A 		7.1
(-3)
A 		34
C 9.5
(-3)
A 		30.9
(3)
A 		23.6
(1)
A 		21.7
(0.4)
A 		21
avr 19.2
(-1.6) 		38.7
(3) 		21.8
(-0.9) 		13
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 26.7
(1.5)
A 		8.1
(-2.5)
A 		17.2
(-0.6)
A 		6
(-3)
A 		33.8
(3)
A 		12.6
(-1.6)
A 		28
B 9.6
(-2.9)
A 		22.2
(-2)
A 		7.7
(-3)
A 		14.3
(-2.6)
A 		63.7
(0.8)
M 		96.7
(3)
P 		89
C 7.4
(-2.8)
A 		8.7
(-2.7)
A 		5.3
(-3)
A 		17.3
(-1.9)
A 		40.8
(0.2)
A 		71.3
(3)
P 		66
avr 14.6
(-2.5) 		13
(-2.7) 		10.1
(-3) 		12.5
(-2.7) 		46.1
(1.3) 		60.2
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.7
(-2.5)
A 		16.1
(3)
A 		8.2
(-0.2)
A 		1.5
(-3)
A 		15
B 13
(3)
A 		2.8
(-2.3)
A 		2.5
(-2.5)
A 		1.5
(-3)
A 		12
C 3.2
(-3)
A 		8.9
(3)
A 		8.2
(2.3)
A 		3.7
(-2.5)
A 		6
avr 6.3
(0.5) 		9.3
(3) 		6.3
(0.5) 		2.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.9
(-0.7)
A 		2.9
(-2)
A 		3.7
(-1.5)
A 		1.5
(-3)
A 		10.2
(3)
A 		3.1
(-1.9)
A 		9
B 3.3
(-2.8)
A 		7.4
(-2)
A 		1.9
(-3)
A 		3.8
(-2.7)
A 		25.9
(1.2)
M 		36.1
(3)
P 		34
C 2.8
(-2.6)
A 		2.6
(-2.7)
A 		1.3
(-3)
A 		3.5
(-2.4)
A 		13.2
(0.2)
A 		23.9
(3)
P 		23
avr 3.7
(-2.6) 		4.3
(-2.4) 		2.3
(-3) 		2.9
(-2.8) 		16.4
(1.5) 		21
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21064
Sequence Type Exemplar sequence
Representative Public ID CEK072AZR NCBI
Target Description CEK072AZR_rc /REP_DB=TREMBL Accession /GB=D65989 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk72a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067098 NCBI Caenorhabditis elegans Y66D12A.3 (Y66D12A.3) mRNA, complete cds. 11/11 None
SNAP00000020817 ENSEMBL cdna:SNAP chromosome:CEL140:III:11568017:11592621:1 10/11 None
GENEFINDER00000020828 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11581535:11593421:1 9/11 None
Y66D12A.3 ENSEMBL cdna:known chromosome:CEL140:III:11589756:11592704:1 gene:Y66D12A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11592381-11592690(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.3
Entrez Gene 176592 Entrez gene
SwissProt Q95Q09 EMBL-EBI
WormBase CE28803 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC70128 Hypothetical protein Y66D12A.3 [Caenorhabditis elegans] ref|NP_499499.1| Y66D12A.3 [Caenorhabditis elegans] 0.0
blast CAC70129 Hypothetical protein Y66D12A.5 [Caenorhabditis elegans] ref|NP_499497.2| Y66D12A.5 [Caenorhabditis elegans] 0.0
blast CAC70128 Hypothetical protein Y66D12A.3 [Caenorhabditis elegans] ref|NP_499499.1| Y66D12A.3 [Caenorhabditis elegans] 1.0E-170
blast CAE67688 Hypothetical protein CBG13256 [Caenorhabditis briggsae] 1.0E-123
blast CAE67688 Hypothetical protein CBG13256 [Caenorhabditis briggsae] 1.0E-117
blast CAC70141 Hypothetical protein Y66D12A.9 [Caenorhabditis elegans] ref|NP_499493.1| Y66D12A.9 [Caenorhabditis elegans] 1.0E-116
blast CAC70131 Hypothetical protein Y66D12A.8 [Caenorhabditis elegans] ref|NP_499494.1| Y66D12A.8 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR003186 EMBL-EBI Proteasome activator pa28, beta subunit 5.4E-63
Pfam IPR003185 EMBL-EBI Proteasome activator pa28, alpha subunit 1.7E-10
Sequence
Target Sequence 
>C. ELEGANS:174986_AT
tccaagaatccgttggcgtcgacgagctctggaatcgtatgtccgccggaaaacaggcaa
aaattttgaactgcttcgagaatcgccttcctgaatttcttatcgacgttgcatttggta
tcgaatcggaagaagtcgtaaatattattgattcggtcaactcgccggtcgttcgtctaa
ccgaaaaaccaattttggacagtctttactaattttgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAGAATCCGTTGGCGTCGACGA 635 587 37 Antisense
GCGTCGACGAGCTCTGGAATCGTAT 280 291 52 Antisense
CGAGCTCTGGAATCGTATGTCCGCC 385 249 59 Antisense
TGGAATCGTATGTCCGCCGGAAAAC 13 545 66 Antisense
TATGTCCGCCGGAAAACAGGCAAAA 631 653 74 Antisense
TGAACTGCTTCGAGAATCGCCTTCC 568 573 103 Antisense
GAATCGCCTTCCTGAATTTCTTATC 239 329 116 Antisense
GAATTTCTTATCGACGTTGCATTTG 498 325 129 Antisense
GACGTTGCATTTGGTATCGAATCGG 492 377 141 Antisense
ATTATTGATTCGGTCAACTCGCCGG 539 9 180 Antisense
GGACAGTCTTTACTAATTTTGTGAT 38 527 233 Antisense
Sequence Source Affymetrix Proprietary Database