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[174985_s_at]

Description CEK010HYR_rc /REP_DB=TREMBL Accession /GB=D27347 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 67      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 82      6grp_total > 57      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 410.5
(3)
P 		357.1
(0.9)
P 		279.8
(-2.1)
P 		256.1
(-3)
P 		154
B 442.6
(3)
P 		311.9
(-1.6)
P 		273.7
(-3)
P 		297.9
(-2.1)
P 		169
C 417.9
(3)
P 		308.8
(-0.6)
P 		374.6
(1.6)
P 		236.4
(-3)
P 		182
avr 423.7
(3) 		325.9
(-0.7) 		309.4
(-1.3) 		263.5
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 429.8
(3)
P 		312
(-2.2)
P 		294.2
(-3)
P 		304
(-2.6)
P 		314.7
(-2.1)
P 		381
(0.8)
P 		136
B 324.4
(-1.6)
P 		335.9
(-1.2)
P 		283.2
(-3)
P 		364.1
(-0.2)
P 		332.6
(-1.3)
P 		454.7
(3)
P 		172
C 281.4
(-3)
P 		399.9
(1.6)
P 		327.8
(-1.2)
P 		321.3
(-1.4)
P 		319.5
(-1.5)
P 		434.4
(3)
P 		153
avr 345.2
(-0.9) 		349.3
(-0.7) 		301.7
(-3) 		329.8
(-1.6) 		322.3
(-2) 		423.4
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 149.5
(3)
P 		77.5
(-0.9)
P 		73.2
(-1.1)
P 		37.5
(-3)
P 		112
B 141.1
(3)
P 		77
(-1.9)
P 		63.4
(-3)
P 		63.5
(-3)
P 		78
C 138.3
(3)
P 		88.8
(-0)
P 		130.6
(2.5)
P 		39.9
(-3)
P 		98
avr 143
(3) 		81.1
(-0.9) 		89.1
(-0.4) 		47
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 79.2
(-1.1)
P 		111
(3)
P 		64.1
(-3)
P 		77.1
(-1.3)
P 		95
(1)
P 		92.8
(0.7)
P 		47
B 112.9
(-0.4)
P 		111.8
(-0.4)
P 		68.8
(-3)
P 		96.4
(-1.4)
P 		135.1
(1)
P 		169.5
(3)
P 		101
C 104.3
(-0.1)
P 		122
(1.3)
P 		83.4
(-1.6)
P 		64.6
(-3)
P 		103.4
(-0.1)
P 		145.4
(3)
P 		81
avr 98.8
(-0.5) 		114.9
(1) 		72.1
(-3) 		79.4
(-2.3) 		111.2
(0.7) 		135.9
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174985_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21198
Sequence Type Exemplar sequence
Representative Public ID CEK010HYR NCBI
Target Description CEK010HYR_rc /REP_DB=TREMBL Accession /GB=D27347 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171884(11), NM_171198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171884 NCBI Caenorhabditis elegans associated with RAN (nuclear import/export) function family member (ran-2) (ran-2) mRNA, complete cds. 11/11 A 
NM_171198 NCBI Caenorhabditis elegans associated with RAN (nuclear import/export) function family member (ran-2) (ran-2) mRNA, complete cds. 11/11 A 
C29E4.3a ENSEMBL cdna:known chromosome:CEL140:III:7933549:7937626:1 gene:C29E4.3 11/11 None
C29E4.3b ENSEMBL cdna:known chromosome:CEL140:III:7933749:7937591:1 gene:C29E4.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010834 4/11 Cross Hyb Matching Probes None
GENEFINDER00000010851 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7937140-7937608(+) 100.0 100.0
Public Domain and Genome References
Ensembl C29E4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84496 Associated with ran (nuclear import/export) function protein 2, isoform a [Caenorhabditis elegans] ref|NP_741233.2| associated with RAN (nuclear import/export) function family member (ran-2) [Caenorhabditis elegans] sp|P34342|RGP2_CAEEL Ran GTPase-activating protein 2 (Ran nuclear import/export related protein 2) (RanGAP) 0.0
blast AAM22042 Associated with ran (nuclear import/export) function protein 2, isoform b [Caenorhabditis elegans] ref|NP_741232.1| associated with RAN (nuclear import/export) function family member (ran-2) [Caenorhabditis elegans] 0.0
blast CAE66900 Hypothetical protein CBG12282 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.62
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.39
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.019
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.84
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.62
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.39
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.019
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.84
Sequence
Target Sequence 
>C. ELEGANS:174985_S_AT
aagtgatttcacgtttgttctcggaacttgttgctcgcggccatttcaagttggagctgg
ctctccttcaacgctttttcccttcacaataatcgagcttctctacacgatatcccagtc
ttcgcgatttttttacatgatttcagataagccgtggttattttatatttggatctacaa
tacatgtattattcatcgtatcgtgaacaatatatttcttcaacttccaatgtatacacg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGATTTCACGTTTGTTCTCGGA 179 159 18 Antisense
TTTGTTCTCGGAACTTGTTGCTCGC 476 667 31 Antisense
TGCTCGCGGCCATTTCAAGTTGGAG 612 581 49 Antisense
TCAAGTTGGAGCTGGCTCTCCTTCA 165 633 63 Antisense
CCTTCACAATAATCGAGCTTCTCTA 160 269 98 Antisense
AATCGAGCTTCTCTACACGATATCC 130 169 108 Antisense
ATATCCCAGTCTTCGCGATTTTTTT 220 21 127 Antisense
TTCGCGATTTTTTTACATGATTTCA 318 697 138 Antisense
ACATGATTTCAGATAAGCCGTGGTT 144 107 152 Antisense
ACATGTATTATTCATCGTATCGTGA 390 107 199 Antisense
TCTTCAACTTCCAATGTATACACGA 177 617 234 Antisense
Sequence Source Affymetrix Proprietary Database