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[174983_at]

Description CEK018AYR_rc /REP_DB=TREMBL Accession /GB=D32509 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 10      6grp_total > 04      4grp_total > 58      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 730
1 2 3 4 range
A 1549.3
(2)
P 		1498.5
(1.5)
P 		1637.4
(3)
P 		1094.3
(-3)
P 		543
B 991.7
(-2.8)
P 		1574.1
(3)
P 		1577.6
(3)
P 		974
(-3)
P 		604
C 1259.9
(-2.4)
P 		1537.6
(1)
P 		1703.9
(3)
P 		1214.8
(-3)
P 		489
avr 1267
(-1.1) 		1536.7
(1.9) 		1639.6
(3) 		1094.4
(-3) 		545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1322
1 2 3 4 5 6 range
A 2061.5
(3)
P 		1502.2
(-0.3)
P 		1059.5
(-2.9)
P 		1466.2
(-0.5)
P 		1376.1
(-1.1)
P 		1046.5
(-3)
P 		1015
B 1820.1
(3)
P 		1539.3
(1.3)
P 		838.5
(-3)
P 		1432.3
(0.6)
P 		1345.8
(0.1)
P 		1145.2
(-1.1)
P 		982
C 1414
(1.2)
P 		1696.6
(3)
P 		1181.9
(-0.2)
P 		1246.6
(0.2)
P 		1161.9
(-0.4)
P 		740
(-3)
P 		957
avr 1765.2
(3) 		1579.4
(1.6) 		1026.6
(-2.6) 		1381.7
(0.1) 		1294.6
(-0.6) 		977.2
(-3) 		788
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 434
1 2 3 4 range
A 564.1
(3)
P 		325.3
(-0.5)
P 		428.1
(1)
P 		160.2
(-3)
P 		404
B 316.3
(0.6)
P 		388.8
(3)
P 		365.6
(2.2)
P 		207.6
(-3)
P 		181
C 417.1
(0.3)
P 		442.1
(0.7)
P 		593.9
(3)
P 		204.8
(-3)
P 		389
avr 432.5
(2.3) 		385.4
(1.3) 		462.5
(3) 		190.9
(-3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 380
(-0)
P 		534.2
(3)
P 		230.7
(-3)
P 		371.9
(-0.2)
P 		415.2
(0.6)
P 		254.8
(-2.5)
P 		304
B 633.3
(3)
P 		512.4
(1.3)
P 		203.6
(-3)
P 		379.4
(-0.5)
P 		546.8
(1.8)
P 		427
(0.1)
P 		430
C 524.1
(3)
P 		517.7
(2.9)
P 		300.8
(-1.8)
P 		250.7
(-2.9)
P 		376
(-0.2)
P 		247.7
(-3)
P 		276
avr 512.5
(2.8) 		521.4
(3) 		245
(-3) 		334
(-1.1) 		446
(1.4) 		309.8
(-1.6) 		276
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21707
Sequence Type Exemplar sequence
Representative Public ID CEK018AYR NCBI
Target Description CEK018AYR_rc /REP_DB=TREMBL Accession /GB=D32509 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072260 NCBI Caenorhabditis elegans K04A8.6 (K04A8.6) mRNA, complete cds. 11/11 None
K04A8.6 ENSEMBL cdna:known chromosome:CEL140:V:6536223:6540656:-1 gene:K04A8.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6536232-6536569(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04A8.6
Entrez Gene 179045 Entrez gene
SwissProt Q94251 EMBL-EBI
WormBase CE27388 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.4874.1.S1_S_AT similar to F-box only protein 11 cfa
DROSOPHILA_2:1637743_AT dm
DROSGENOME1:153116_AT dm
CHICKEN:GGA.18901.1.S1_S_AT F-box protein 11 gga
CHICKEN:GGA.20036.1.S1_AT F-box protein 11 gga
CHICKEN:GGA.2548.1.S1_AT F-box protein 11 gga
CHICKEN:GGAAFFX.21370.1.S1_S_AT F-box protein 11 gga
CHICKEN:GGAAFFX.22732.1.S1_S_AT F-box protein 11 gga
HG-U133_PLUS_2:203255_AT F-box protein 11 hs
HG-U133A:203255_AT F-box protein 11 hs
HG-U133A_2:203255_AT F-box protein 11 hs
HG-U133_PLUS_2:219208_AT F-box protein 11 hs
HG-U133A:219208_AT F-box protein 11 hs
HG-U133A_2:219208_AT F-box protein 11 hs
HU35KSUBB:RC_Z41670_AT F-box protein 11 hs
HG-U133_PLUS_2:222119_S_AT F-box protein 11 hs
HG-U133A_2:222119_S_AT F-box protein 11 hs
HG-U133A:222119_S_AT F-box protein 11 hs
U133_X3P:G13376712_3P_AT F-box protein 11 hs
U133_X3P:G10048403_3P_AT F-box protein 11 hs
U133_X3P:HS.284289.1.S1_3P_A_AT F-box protein 11 hs
HG-U95D:88686_AT F-box protein 11 hs
HG-U133_PLUS_2:232364_AT F-box protein 11 hs
HG-U133B:232364_AT F-box protein 11 hs
HG-U133_PLUS_2:235873_AT F-box protein 11 hs
HG-U133B:235873_AT F-box protein 11 hs
HG-U95E:74695_AT F-box protein 11 hs
HU35KSUBD:RC_C21438_AT F-box protein 11 hs
HU35KSUBC:RC_AA102294_AT F-box protein 11 hs
MU11KSUBA:AA693025_S_AT F-box protein 11 mm
MOE430A:1434108_AT F-box protein 11 mm
MOUSE430A_2:1434108_AT F-box protein 11 mm
MOUSE430_2:1434108_AT F-box protein 11 mm
MU19KSUBB:TC34271_AT F-box protein 11, mRNA (cDNA clone IMAGE:4237432) mm
MU19KSUBC:TC40299_AT F-box protein 11, mRNA (cDNA clone IMAGE:4237432) mm
RG-U34C:RC_AI145603_AT F-box only protein 11 rn
RG-U34C:RC_AI233823_AT F-box only protein 11 rn
RAE230A:1376587_AT F-box only protein 11 rn
RAT230_2:1376587_AT F-box only protein 11 rn
RG-U34B:RC_AI031025_AT F-box only protein 11 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4842 ubiquitin-protein ligase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48052 Hypothetical protein K04A8.6 [Caenorhabditis elegans] ref|NP_504661.1| K04A8.6 [Caenorhabditis elegans] 0.0
blast CAE71903 Hypothetical protein CBG18961 [Caenorhabditis briggsae] 0.0
blast EAA01825 ENSANGP00000008498 [Anopheles gambiae str. PEST] ref|XP_321355.2| ENSANGP00000008498 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 5.1E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-12
Sequence
Target Sequence 
>C. ELEGANS:174983_AT
tcaccttctccacaaatatatcattcacttcttctctcatgttcgtgttttgtattcatt
atcacatcacactacccatttcgcagtctttcataccgatttgagatctctttctctttt
cctcccaattattttcttcgaacttttttggtgtaatttaacactctagctttttttttc
gttcacgtttttccgcattgcttatcacttttatctttcaacctttttaaagtgcaaact
tttctgtgatatagttgatcctttaagtctttttgcggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCTTCTCCACAAATATATCATT 20 627 13 Antisense
AAATATATCATTCACTTCTTCTCTC 152 117 26 Antisense
TCTTCTCTCATGTTCGTGTTTTGTA 340 617 42 Antisense
CCATTTCGCAGTCTTTCATACCGAT 592 269 88 Antisense
GCAGTCTTTCATACCGATTTGAGAT 528 311 95 Antisense
TGTAATTTAACACTCTAGCTTTTTT 514 559 164 Antisense
TCACGTTTTTCCGCATTGCTTATCA 641 621 195 Antisense
TTCCGCATTGCTTATCACTTTTATC 1 699 203 Antisense
TATCACTTTTATCTTTCAACCTTTT 206 661 215 Antisense
AAGTGCAAACTTTTCTGTGATATAG 287 159 242 Antisense
TGATCCTTTAAGTCTTTTTGCGGCC 513 565 268 Antisense
Sequence Source Affymetrix Proprietary Database