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[174981_at]

Description CEK028HZR_rc /REP_DB=TREMBL Accession /GB=D33299 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28h12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 46      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 76      6grp_total > 37      4grp_total > 52      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 1413.5
(0.1)
P
1542.6
(3)
P
1363.2
(-1)
P
1272.9
(-3)
P
270
B 1563.4
(3)
P
1366.7
(-0.7)
P
1245.6
(-3)
P
1254.7
(-2.8)
P
318
C 1380.2
(0.8)
P
1361.6
(0.5)
P
1514.4
(3)
P
1145.9
(-3)
P
369
avr 1452.4
(3)
1423.6
(2.2)
1374.4
(0.9)
1224.5
(-3)
228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 577
1 2 3 4 5 6 range
A 1173.1
(2.8)
P
1153.6
(2.4)
P
1099.6
(1.2)
P
900.8
(-3)
P
1009.1
(-0.7)
P
1182.9
(3)
P
282
B 1288.9
(2.1)
P
1373.4
(3)
P
796.3
(-3)
P
1118.7
(0.4)
P
857.4
(-2.4)
P
1183
(1)
P
577
C 1295.5
(3)
P
1181.2
(1)
P
1134.8
(0.2)
P
1213.9
(1.6)
P
948.1
(-3)
P
1248.2
(2.2)
P
347
avr 1252.5
(3)
1236.1
(2.7)
1010.2
(-1.6)
1077.8
(-0.3)
938.2
(-3)
1204.7
(2.1)
314
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 514.7
(3)
P
334.9
(-0.3)
P
356.4
(0.1)
P
186.3
(-3)
P
328
B 498.6
(3)
P
337.5
(-1.2)
P
288.6
(-2.4)
P
267.4
(-3)
P
231
C 456.9
(1.7)
P
391.5
(0.6)
P
527.8
(3)
P
193.2
(-3)
P
335
avr 490.1
(3)
354.6
(0)
390.9
(0.8)
215.6
(-3)
275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 216.2
(-3)
P
410.3
(3)
P
239.5
(-2.3)
P
228.5
(-2.6)
P
304.5
(-0.3)
P
288
(-0.8)
P
194
B 448.5
(2.8)
P
457.1
(3)
P
193.4
(-3)
P
296.3
(-0.7)
P
348.3
(0.5)
P
441.1
(2.6)
P
264
C 480.2
(3)
P
360.4
(-0)
P
288.8
(-1.9)
P
244.1
(-3)
P
306.8
(-1.4)
P
417.9
(1.4)
P
236
avr 381.6
(2)
409.3
(3)
240.6
(-3)
256.3
(-2.4)
319.9
(-0.2)
382.3
(2)
169
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20328
Sequence Type Exemplar sequence
Representative Public ID CEK028HZR NCBI
Target Description CEK028HZR_rc /REP_DB=TREMBL Accession /GB=D33299 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170941(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_170941 NCBI Caenorhabditis elegans AdaPtin, Gamma chain (clathrin associated complex) family member (apg-1) (apg-1) mRNA, complete cds. 11/11 None
Y105E8A.9.2 ENSEMBL cdna:known chromosome:CEL140:I:14414139:14426042:1 gene:Y105E8A.9 11/11 None
Y105E8A.9.1 ENSEMBL cdna:known chromosome:CEL140:I:14414146:14426042:1 gene:Y105E8A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14425584-14425963(+) 93.93 100.0
Public Domain and Genome References
Gene Title
Gene Symbol apg-1
Ensembl Y105E8A.9
Entrez Gene 173304 Entrez gene
SwissProt Q8WQB3 EMBL-EBI
WormBase CE29847 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263728_AT gamma-adaptin, putative at
ATGENOME1:14981_AT gamma-adaptin, putative at
CANINE:1598549_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE:1591975_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE:1587695_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE_2:CFA.10636.1.S1_S_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE_2:CFA.10636.2.S1_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE_2:CFA.10636.2.S1_S_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
CANINE_2:CFA.1399.1.A1_AT similar to adaptor-related protein complex 1, gamma 1 subunit isoform a cfa
DROSOPHILA_2:1634294_S_AT dm
DROSGENOME1:144729_AT dm
CHICKEN:GGA.14620.1.A1_AT adaptor-related protein complex 1, gamma 1 subunit gga
CHICKEN:GGA.7223.1.A1_AT adaptor-related protein complex 1, gamma 1 subunit gga
CHICKEN:GGA.7223.1.A1_S_AT adaptor-related protein complex 1, gamma 1 subunit gga
CHICKEN:GGAAFFX.12654.1.S1_AT adaptor-related protein complex 1, gamma 1 subunit gga
HG-FOCUS:203350_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133A:203350_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133_PLUS_2:203350_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133A_2:203350_AT adaptor-related protein complex 1, gamma 1 subunit hs
HU35KSUBA:RC_AA406105_AT adaptor-related protein complex 1, gamma 1 subunit hs
HU35KSUBB:RC_N26777_AT adaptor-related protein complex 1, gamma 1 subunit hs
HU35KSUBB:RC_AA142984_AT adaptor-related protein complex 1, gamma 1 subunit hs
U133_X3P:G4501978_3P_AT adaptor-related protein complex 1, gamma 1 subunit hs
U133_X3P:HS.172635.0.A2_3P_AT adaptor-related protein complex 1, gamma 1 subunit hs
U133_X3P:HS.172635.0.A1_3P_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133_PLUS_2:225754_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133B:225754_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133_PLUS_2:225771_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133B:225771_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U95AV2:35274_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U95B:51942_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U95B:58911_AT adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133_PLUS_2:241294_AT Adaptor-related protein complex 1, gamma 1 subunit hs
HG-U133B:241294_AT Adaptor-related protein complex 1, gamma 1 subunit hs
HG-U95D:91931_AT Adaptor-related protein complex 1, gamma 1 subunit hs
HU35KSUBC:RC_N66443_AT Adaptor-related protein complex 1, gamma 1 subunit hs
U133_X3P:HS.170332.0.A1_3P_AT Adaptor-related protein complex 1, gamma 1 subunit hs
MU11KSUBA:AA409002_RC_S_AT adaptor protein complex AP-1, gamma 1 subunit mm
MU11KSUBB:MSA.2150.0_G_AT adaptor protein complex AP-1, gamma 1 subunit mm
MU11KSUBB:MSA.2150.0_AT adaptor protein complex AP-1, gamma 1 subunit mm
MG-U74AV2:92288_AT adaptor protein complex AP-1, gamma 1 subunit mm
MG-U74AV2:103242_AT adaptor protein complex AP-1, gamma 1 subunit mm
MG-U74AV2:161593_R_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOE430A:1460712_S_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOUSE430A_2:1460712_S_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOUSE430_2:1460712_S_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOE430A:1423388_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOUSE430A_2:1423388_AT adaptor protein complex AP-1, gamma 1 subunit mm
MOUSE430_2:1423388_AT adaptor protein complex AP-1, gamma 1 subunit mm
MG-U74BV2:106634_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOE430B:1434081_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOUSE430_2:1434081_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOUSE430A_2:1460658_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOE430A:1460658_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MOUSE430_2:1460658_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MU19KSUBA:TC14536_S_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MU19KSUBA:TC16670_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
MU19KSUBB:TC29727_I_AT Adaptor protein complex AP-1, gamma 1 subunit (Ap1g1), mRNA mm
RG-U34C:RC_AI237324_AT adaptor-related protein complex 1, gamma 1 subunit rn
RAE230A:1373816_AT adaptor-related protein complex 1, gamma 1 subunit rn
RAT230_2:1373816_AT adaptor-related protein complex 1, gamma 1 subunit rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6461 protein complex assembly inferred from electronic annotation QuickGO AmiGO
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30130 clathrin coat of trans-Golgi network vesicle inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD21660 Hypothetical protein Y105E8A.9 [Caenorhabditis elegans] ref|NP_740937.1| AdaPtin, Gamma chain (clathrin associated complex) family member (apg-1) [Caenorhabditis elegans] 0.0
blast CAE64132 Hypothetical protein CBG08748 [Caenorhabditis briggsae] 0.0
blast XP_396336 PREDICTED: similar to CG9113-PC, isoform C [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.4E-13
Sequence
Target Sequence
>C. ELEGANS:174981_AT
ttttcttcaaattcctgctgctaggggttactgtgataatattttcccctatttacccga
aaaaattccaaaaaaattgcactcccgacccccacttttccaccaccaaaaaatccgctt
tttcatgtatttacccctaaaattgcacaaataggcacctgcctgcccacatacctacag
gcagtgccttgtaggtaggcacgcaggtaggcaagcctactatcctcaataattagtttt
ttattggctaaaaaatcaaaaaaatatcgtcttggcagagtagagat


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TTTTCTTCAAATTCCTGCTGCTAGG 135 677 74 Antisense
ATTCCTGCTGCTAGGGGTTACTGTG 285 7 84 Antisense
GTTACTGTGATAATATTTTCCCCTA 256 447 100 Antisense
TGTATTTACCCCTAAAATTGCACAA 687 555 199 Antisense
TGCACAAATAGGCACCTGCCTGCCC 677 575 217 Antisense
TGCCTGCCCACATACCTACAGGCAG 538 585 233 Antisense
CCACATACCTACAGGCAGTGCCTTG 130 275 240 Antisense
TACAGGCAGTGCCTTGTAGGTAGGC 5 643 249 Antisense
GTAGGTAGGCACGCAGGTAGGCAAG 628 453 264 Antisense
TAGGCAAGCCTACTATCCTCAATAA 501 651 281 Antisense
AATATCGTCTTGGCAGAGTAGAGAT 285 171 336 Antisense
Sequence Source Affymetrix Proprietary Database