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[174980_at]

Description CEK111G5R_rc /REP_DB=TREMBL Accession /GB=D72952 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk111g5 : 3prime end, single read.
Cluster 6grp_total > 71      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 0.9
(-3)
A 		36
(2.2)
A 		4.5
(-2.5)
A 		41.3
(3)
A 		40
B 11
(-3)
A 		18.8
(-0.7)
A 		11.8
(-2.8)
A 		31.5
(3)
A 		21
C 18.2
(-2.9)
M 		17.2
(-3)
A 		21.7
(-2.4)
P 		63.2
(3)
P 		46
avr 10
(-3) 		24
(-0.6) 		12.7
(-2.5) 		45.3
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 9.6
(-3)
A 		17.8
(0)
A 		25.9
(3)
A 		20.7
(1.1)
A 		18.8
(0.4)
A 		11.1
(-2.4)
A 		16
B 27.8
(0.9)
P 		33.8
(3)
P 		24.2
(-0.3)
A 		25.2
(0)
A 		17
(-2.8)
A 		16.5
(-3)
M 		17
C 20.6
(-0.4)
A 		10
(-1.9)
A 		21.1
(-0.3)
A 		43.5
(3)
M 		38.7
(2.3)
P 		2.8
(-3)
A 		41
avr 19.3
(-0.2) 		20.5
(0.2) 		23.7
(1.1) 		29.8
(3) 		24.8
(1.5) 		10.1
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.3
(-3)
A 		7.8
(3)
A 		1.2
(-2.3)
A 		6
(1.6)
A 		8
B 3.5
(-1.8)
A 		4.6
(-0.2)
A 		2.7
(-3)
A 		6.7
(3)
A 		4
C 6
(-1.9)
M 		4.9
(-3)
A 		7.6
(-0.2)
P 		10.7
(3)
P 		6
avr 3.3
(-3) 		5.8
(0.3) 		3.8
(-2.3) 		7.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.8
(-3)
A 		6.3
(3)
A 		5.6
(2.1)
A 		5.2
(1.5)
A 		5.7
(2.2)
A 		2.7
(-1.8)
A 		5
B 9.7
(1.3)
P 		11.2
(3)
P 		5.9
(-3)
A 		6.7
(-2.1)
A 		6.9
(-1.9)
A 		6.1
(-2.8)
M 		5
C 7.6
(0.5)
A 		3
(-1.9)
A 		5.4
(-0.7)
A 		8.8
(1.1)
M 		12.5
(3)
P 		0.9
(-3)
A 		12
avr 6.4
(0.7) 		6.8
(1.2) 		5.6
(-0.2) 		6.9
(1.3) 		8.4
(3) 		3.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21661
Sequence Type Exemplar sequence
Representative Public ID CEK111G5R NCBI
Target Description CEK111G5R_rc /REP_DB=TREMBL Accession /GB=D72952 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk111g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068167 NCBI Caenorhabditis elegans R08C7.10c (R08C7.10) mRNA, complete cds. 11/11 None
R08C7.10c ENSEMBL cdna:known chromosome:CEL140:IV:4443125:4445834:-1 gene:R08C7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177211 3 1 NM_068165 184612_s_at (11)
NM_068166 184612_s_at (11)
NM_068167 174980_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4443140-4443451(-) 100.0 100.0
Public Domain and Genome References
Ensembl R08C7.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK82911 Hypothetical protein R08C7.10c [Caenorhabditis elegans] ref|NP_500568.1| R08C7.10c [Caenorhabditis elegans] 0.0
blast AAC48078 Hypothetical protein R08C7.10a [Caenorhabditis elegans] ref|NP_500567.1| R08C7.10a [Caenorhabditis elegans] 0.0
blast AAK82910 Hypothetical protein R08C7.10b [Caenorhabditis elegans] ref|NP_500566.1| R08C7.10b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174980_AT
aattggcgtttgatgtatgttgaattcagacccgacgaaaaggatattaacgaaaaattg
gcaaattaaccgacaaaaaatttaagattttgagttctaaatccctggcagttcgtagag
tctgcaggagttgtggcaaactacgcaagactcctgaaaagttgcgcaagattatgcagg
agttgtgcaagattgtagcaagaatccaaaacttctatgctacagtacacaggagtttca
cttcatctgggactgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGCGTTTGATGTATGTTGAAT 364 179 35 Antisense
GTATGTTGAATTCAGACCCGACGAA 322 447 49 Antisense
GAGTTCTAAATCCCTGGCAGTTCGT 4 399 126 Antisense
AATCCCTGGCAGTTCGTAGAGTCTG 182 167 134 Antisense
GAGTCTGCAGGAGTTGTGGCAAACT 289 399 152 Antisense
TGGCAAACTACGCAAGACTCCTGAA 61 545 168 Antisense
AAGACTCCTGAAAAGTTGCGCAAGA 246 153 181 Antisense
GTTGCGCAAGATTATGCAGGAGTTG 709 439 195 Antisense
GAATCCAAAACTTCTATGCTACAGT 405 329 236 Antisense
ATGCTACAGTACACAGGAGTTTCAC 408 41 251 Antisense
GTTTCACTTCATCTGGGACTGTTTT 17 449 269 Antisense
Sequence Source Affymetrix Proprietary Database